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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p13
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082...    31   1.1  
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833...    29   2.5  
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713...    29   4.4  
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782...    29   4.4  
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217...    29   4.4  
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           28   5.8  
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38...    28   5.8  
02_05_1168 + 34651143-34651424,34651983-34652138,34652239-346523...    28   5.8  
06_01_0441 + 3130906-3131424,3131847-3132269                           28   7.6  
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815...    28   7.6  

>08_02_1393 -
           26706198-26706592,26707055-26707301,26707407-26708249,
           26708420-26709091
          Length = 718

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +2

Query: 290 HSLDSTKTRHGSLRYDFKSSASLEQVSYRCLVNNN 394
           H+L    + H ++ Y F S+A+LEQV++R + +++
Sbjct: 357 HNLFPALSEHDAMMYLFHSNANLEQVTFRAMCDHD 391


>06_01_1053 -
           8328902-8329156,8330538-8330804,8330895-8332343,
           8332461-8332619,8333246-8333372,8333444-8333775,
           8333859-8334593,8334735-8335073,8335160-8335313,
           8335405-8336154,8336242-8336372
          Length = 1565

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
 Frame = +2

Query: 89  EASPTEDDPSTCTSEPSMSCDKKNPISEEIE-EELQFHNDYFK-TEREERISLNNSFRSV 262
           E  PT D+P +     S++C ++  + ++ +   ++F+ ++ K   R  R  L N     
Sbjct: 648 EYFPTSDNPQSILVSLSIACPQRGVVCKQSQLFRIKFYGNFDKPLGRYFREDLFNQISCC 707

Query: 263 RSAKTTEPSHSLDSTKTRHGSLRYDFKSSASL 358
            S K    SH    T  R GSL    ++ AS+
Sbjct: 708 ESCKEPAESHVRCYTH-RQGSLTISVRNLASV 738


>08_02_0545 +
           18470313-18470669,18470901-18471095,18471183-18471362,
           18471462-18471656,18472081-18472179,18472271-18472780,
           18472896-18473225
          Length = 621

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 536 RKSKLY*KTKE-NKTKSINNHKF**NRTILNSGSKLRNCGNVPSSYRLC 393
           RK K +    E  KT+ +NN  F   RTI NS   L   G V +  +LC
Sbjct: 291 RKDKAFEALNELRKTRDLNNTSFHQYRTISNSVRDLSARGEVEAVQQLC 339


>07_01_0929 +
           7818973-7820019,7820092-7820328,7820455-7820541,
           7820785-7820919
          Length = 501

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 86  KEASPTEDDPSTCTSEPS--MSCDKKNPISEEIEE 184
           K  +P   D  + + EPS   S D+KNP  EE EE
Sbjct: 401 KATAPAPSDDGSASPEPSEGESADEKNPEEEEEEE 435


>01_05_0174 +
           18919759-18920265,18920381-18920443,18921060-18921761,
           18922934-18923068,18923391-18923474,18924095-18924151,
           18924290-18924376,18924963-18925205
          Length = 625

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +1

Query: 118 DMYQRTEHELRQKESNIRRNRRRTAVPQRLLQDRERRTDQSK*FVPFSSFSENDRTES 291
           +M +  E E R++    RR RRR   P+R  ++ E   ++ +         E + TE+
Sbjct: 80  EMRRNEEEERREETQTRRRRRRRGRKPKRPAEESEEDEEEEEEEAKAEEAREEENTEA 137


>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
 Frame = +2

Query: 26  LFEAVNSDCETLDVXXXXXXKEASPTEDDPSTCTSEPSMSCDKKNPISEEIEEELQFHND 205
           LF     DC+TL         +AS T +D S   + PS +    NP+  E++ ++  HN+
Sbjct: 144 LFRRDRDDCQTLT------SPQASITFNDSSLTLTGPSRAVVLINPVMFEVDLKVITHNN 197

Query: 206 ----YFKTEREERISLNNSFRSVRSAKTTEPSHSLDSTK-TRHGSLRYDF 340
                 ++E ++++   N+F     A       +  S + T H ++ + F
Sbjct: 198 SGLPLSESEEDDKVLSYNAFFYDGVAHMNNTGFARRSVESTEHSTMEFVF 247


>10_01_0030 -
           386008-388056,388166-388360,388931-389062,389167-389538,
           389753-389894,392274-392533,392737-393015,394796-394939
          Length = 1190

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 136 EHELRQKESNIRRNRRRTAVPQRLLQDRERRTDQSK 243
           E E  ++E   RR RRRT   ++ L+ +ER  ++ K
Sbjct: 514 EEEKEKREEEERRERRRTKEREKKLRRKERLKEKEK 549


>02_05_1168 +
           34651143-34651424,34651983-34652138,34652239-34652346,
           34652778-34652888,34652985-34654421,34654598-34654852
          Length = 782

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 440 SKLRNCGNVPSSYRLCCY*RGIDKRPA 360
           SKL +C N P+SY  C   R + K+PA
Sbjct: 716 SKLPSCNNQPNSYLACL--RAVKKQPA 740


>06_01_0441 + 3130906-3131424,3131847-3132269
          Length = 313

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 223 SLGLEVIVVELQFFFDFFGYWILFVATHA 137
           SLG       L   F F+GYW++F   HA
Sbjct: 259 SLGEICTCARLAVAFLFYGYWLMFYRLHA 287


>01_06_0213 +
           27580635-27581105,27581206-27581298,27581376-27581540,
           27581640-27581862,27582329-27582429,27582666-27582713,
           27583086-27583172,27583745-27583879,27583985-27584140,
           27585336-27585545,27585641-27586351,27586429-27586974,
           27587872-27588495,27588595-27588699,27590460-27590711,
           27590939-27591766
          Length = 1584

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 118 DMYQRTEHELRQKESNIRRNRRRTAVPQRLLQDRERRTDQ 237
           DM +R   E  +KE   R +R R    +RLL++R+R  ++
Sbjct: 183 DMMKRKREEQMRKEME-RHDRERRKEEERLLRERQREQER 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,565,167
Number of Sequences: 37544
Number of extensions: 285712
Number of successful extensions: 932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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