BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov10p13 (662 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082... 31 1.1 06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 29 2.5 08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 29 4.4 07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782... 29 4.4 01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 29 4.4 12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 28 5.8 10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 28 5.8 02_05_1168 + 34651143-34651424,34651983-34652138,34652239-346523... 28 5.8 06_01_0441 + 3130906-3131424,3131847-3132269 28 7.6 01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 7.6 >08_02_1393 - 26706198-26706592,26707055-26707301,26707407-26708249, 26708420-26709091 Length = 718 Score = 30.7 bits (66), Expect = 1.1 Identities = 12/35 (34%), Positives = 24/35 (68%) Frame = +2 Query: 290 HSLDSTKTRHGSLRYDFKSSASLEQVSYRCLVNNN 394 H+L + H ++ Y F S+A+LEQV++R + +++ Sbjct: 357 HNLFPALSEHDAMMYLFHSNANLEQVTFRAMCDHD 391 >06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343, 8332461-8332619,8333246-8333372,8333444-8333775, 8333859-8334593,8334735-8335073,8335160-8335313, 8335405-8336154,8336242-8336372 Length = 1565 Score = 29.5 bits (63), Expect = 2.5 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Frame = +2 Query: 89 EASPTEDDPSTCTSEPSMSCDKKNPISEEIE-EELQFHNDYFK-TEREERISLNNSFRSV 262 E PT D+P + S++C ++ + ++ + ++F+ ++ K R R L N Sbjct: 648 EYFPTSDNPQSILVSLSIACPQRGVVCKQSQLFRIKFYGNFDKPLGRYFREDLFNQISCC 707 Query: 263 RSAKTTEPSHSLDSTKTRHGSLRYDFKSSASL 358 S K SH T R GSL ++ AS+ Sbjct: 708 ESCKEPAESHVRCYTH-RQGSLTISVRNLASV 738 >08_02_0545 + 18470313-18470669,18470901-18471095,18471183-18471362, 18471462-18471656,18472081-18472179,18472271-18472780, 18472896-18473225 Length = 621 Score = 28.7 bits (61), Expect = 4.4 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = -1 Query: 536 RKSKLY*KTKE-NKTKSINNHKF**NRTILNSGSKLRNCGNVPSSYRLC 393 RK K + E KT+ +NN F RTI NS L G V + +LC Sbjct: 291 RKDKAFEALNELRKTRDLNNTSFHQYRTISNSVRDLSARGEVEAVQQLC 339 >07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541, 7820785-7820919 Length = 501 Score = 28.7 bits (61), Expect = 4.4 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = +2 Query: 86 KEASPTEDDPSTCTSEPS--MSCDKKNPISEEIEE 184 K +P D + + EPS S D+KNP EE EE Sbjct: 401 KATAPAPSDDGSASPEPSEGESADEKNPEEEEEEE 435 >01_05_0174 + 18919759-18920265,18920381-18920443,18921060-18921761, 18922934-18923068,18923391-18923474,18924095-18924151, 18924290-18924376,18924963-18925205 Length = 625 Score = 28.7 bits (61), Expect = 4.4 Identities = 15/58 (25%), Positives = 27/58 (46%) Frame = +1 Query: 118 DMYQRTEHELRQKESNIRRNRRRTAVPQRLLQDRERRTDQSK*FVPFSSFSENDRTES 291 +M + E E R++ RR RRR P+R ++ E ++ + E + TE+ Sbjct: 80 EMRRNEEEERREETQTRRRRRRRGRKPKRPAEESEEDEEEEEEEAKAEEAREEENTEA 137 >12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 Length = 372 Score = 28.3 bits (60), Expect = 5.8 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 5/110 (4%) Frame = +2 Query: 26 LFEAVNSDCETLDVXXXXXXKEASPTEDDPSTCTSEPSMSCDKKNPISEEIEEELQFHND 205 LF DC+TL +AS T +D S + PS + NP+ E++ ++ HN+ Sbjct: 144 LFRRDRDDCQTLT------SPQASITFNDSSLTLTGPSRAVVLINPVMFEVDLKVITHNN 197 Query: 206 ----YFKTEREERISLNNSFRSVRSAKTTEPSHSLDSTK-TRHGSLRYDF 340 ++E ++++ N+F A + S + T H ++ + F Sbjct: 198 SGLPLSESEEDDKVLSYNAFFYDGVAHMNNTGFARRSVESTEHSTMEFVF 247 >10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-389538, 389753-389894,392274-392533,392737-393015,394796-394939 Length = 1190 Score = 28.3 bits (60), Expect = 5.8 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 136 EHELRQKESNIRRNRRRTAVPQRLLQDRERRTDQSK 243 E E ++E RR RRRT ++ L+ +ER ++ K Sbjct: 514 EEEKEKREEEERRERRRTKEREKKLRRKERLKEKEK 549 >02_05_1168 + 34651143-34651424,34651983-34652138,34652239-34652346, 34652778-34652888,34652985-34654421,34654598-34654852 Length = 782 Score = 28.3 bits (60), Expect = 5.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 440 SKLRNCGNVPSSYRLCCY*RGIDKRPA 360 SKL +C N P+SY C R + K+PA Sbjct: 716 SKLPSCNNQPNSYLACL--RAVKKQPA 740 >06_01_0441 + 3130906-3131424,3131847-3132269 Length = 313 Score = 27.9 bits (59), Expect = 7.6 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -2 Query: 223 SLGLEVIVVELQFFFDFFGYWILFVATHA 137 SLG L F F+GYW++F HA Sbjct: 259 SLGEICTCARLAVAFLFYGYWLMFYRLHA 287 >01_06_0213 + 27580635-27581105,27581206-27581298,27581376-27581540, 27581640-27581862,27582329-27582429,27582666-27582713, 27583086-27583172,27583745-27583879,27583985-27584140, 27585336-27585545,27585641-27586351,27586429-27586974, 27587872-27588495,27588595-27588699,27590460-27590711, 27590939-27591766 Length = 1584 Score = 27.9 bits (59), Expect = 7.6 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +1 Query: 118 DMYQRTEHELRQKESNIRRNRRRTAVPQRLLQDRERRTDQ 237 DM +R E +KE R +R R +RLL++R+R ++ Sbjct: 183 DMMKRKREEQMRKEME-RHDRERRKEEERLLRERQREQER 221 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,565,167 Number of Sequences: 37544 Number of extensions: 285712 Number of successful extensions: 932 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 901 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 932 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1667659452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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