Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10p13
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082... 31 1.1
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 29 2.5
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 29 4.4
07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782... 29 4.4
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 29 4.4
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 28 5.8
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 28 5.8
02_05_1168 + 34651143-34651424,34651983-34652138,34652239-346523... 28 5.8
06_01_0441 + 3130906-3131424,3131847-3132269 28 7.6
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 28 7.6
>08_02_1393 -
26706198-26706592,26707055-26707301,26707407-26708249,
26708420-26709091
Length = 718
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 290 HSLDSTKTRHGSLRYDFKSSASLEQVSYRCLVNNN 394
H+L + H ++ Y F S+A+LEQV++R + +++
Sbjct: 357 HNLFPALSEHDAMMYLFHSNANLEQVTFRAMCDHD 391
>06_01_1053 -
8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Frame = +2
Query: 89 EASPTEDDPSTCTSEPSMSCDKKNPISEEIE-EELQFHNDYFK-TEREERISLNNSFRSV 262
E PT D+P + S++C ++ + ++ + ++F+ ++ K R R L N
Sbjct: 648 EYFPTSDNPQSILVSLSIACPQRGVVCKQSQLFRIKFYGNFDKPLGRYFREDLFNQISCC 707
Query: 263 RSAKTTEPSHSLDSTKTRHGSLRYDFKSSASL 358
S K SH T R GSL ++ AS+
Sbjct: 708 ESCKEPAESHVRCYTH-RQGSLTISVRNLASV 738
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 536 RKSKLY*KTKE-NKTKSINNHKF**NRTILNSGSKLRNCGNVPSSYRLC 393
RK K + E KT+ +NN F RTI NS L G V + +LC
Sbjct: 291 RKDKAFEALNELRKTRDLNNTSFHQYRTISNSVRDLSARGEVEAVQQLC 339
>07_01_0929 +
7818973-7820019,7820092-7820328,7820455-7820541,
7820785-7820919
Length = 501
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 86 KEASPTEDDPSTCTSEPS--MSCDKKNPISEEIEE 184
K +P D + + EPS S D+KNP EE EE
Sbjct: 401 KATAPAPSDDGSASPEPSEGESADEKNPEEEEEEE 435
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 118 DMYQRTEHELRQKESNIRRNRRRTAVPQRLLQDRERRTDQSK*FVPFSSFSENDRTES 291
+M + E E R++ RR RRR P+R ++ E ++ + E + TE+
Sbjct: 80 EMRRNEEEERREETQTRRRRRRRGRKPKRPAEESEEDEEEEEEEAKAEEAREEENTEA 137
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 28.3 bits (60), Expect = 5.8
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Frame = +2
Query: 26 LFEAVNSDCETLDVXXXXXXKEASPTEDDPSTCTSEPSMSCDKKNPISEEIEEELQFHND 205
LF DC+TL +AS T +D S + PS + NP+ E++ ++ HN+
Sbjct: 144 LFRRDRDDCQTLT------SPQASITFNDSSLTLTGPSRAVVLINPVMFEVDLKVITHNN 197
Query: 206 ----YFKTEREERISLNNSFRSVRSAKTTEPSHSLDSTK-TRHGSLRYDF 340
++E ++++ N+F A + S + T H ++ + F
Sbjct: 198 SGLPLSESEEDDKVLSYNAFFYDGVAHMNNTGFARRSVESTEHSTMEFVF 247
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 136 EHELRQKESNIRRNRRRTAVPQRLLQDRERRTDQSK 243
E E ++E RR RRRT ++ L+ +ER ++ K
Sbjct: 514 EEEKEKREEEERRERRRTKEREKKLRRKERLKEKEK 549
>02_05_1168 +
34651143-34651424,34651983-34652138,34652239-34652346,
34652778-34652888,34652985-34654421,34654598-34654852
Length = 782
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 440 SKLRNCGNVPSSYRLCCY*RGIDKRPA 360
SKL +C N P+SY C R + K+PA
Sbjct: 716 SKLPSCNNQPNSYLACL--RAVKKQPA 740
>06_01_0441 + 3130906-3131424,3131847-3132269
Length = 313
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 223 SLGLEVIVVELQFFFDFFGYWILFVATHA 137
SLG L F F+GYW++F HA
Sbjct: 259 SLGEICTCARLAVAFLFYGYWLMFYRLHA 287
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 118 DMYQRTEHELRQKESNIRRNRRRTAVPQRLLQDRERRTDQ 237
DM +R E +KE R +R R +RLL++R+R ++
Sbjct: 183 DMMKRKREEQMRKEME-RHDRERRKEEERLLRERQREQER 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,565,167
Number of Sequences: 37544
Number of extensions: 285712
Number of successful extensions: 932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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