Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p13
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    33   0.003
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      30   0.017
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = +2

Query: 344 SSASLEQVSYRCLVNNNKVDKRKVRYRSSVTYSLSLE 454
           SSA+   +++RCL  NNK+D R  R+  +V  +++++
Sbjct: 362 SSAATLPITFRCLEENNKIDSRVTRFVVAVGATVNMD 398


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +2

Query: 86  KEASPTEDDPSTCTSEPSMSCDKKNPISEEIEEELQFHNDYFKT-EREERISLNNSFRSV 262
           K  S T ++ S   S  S +  K    S    EE+Q         ER+   SLN +F ++
Sbjct: 217 KRKSSTIENESETESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSLNEAFAAL 276

Query: 263 RSAKTTEPSHSLDSTKTRHGSLRY-DF 340
           R    T PS  L   +T   + RY DF
Sbjct: 277 RKIIPTLPSDKLSKIQTLKLATRYIDF 303


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 296 LDSTKTRHGSLRYDFKSSASLEQVS 370
           ++  K  HG    DFK++ + EQV+
Sbjct: 416 VEGIKLAHGGSSKDFKTTRTREQVT 440


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 296 LDSTKTRHGSLRYDFKSSASLEQVS 370
           ++  K  HG    DFK++ + EQV+
Sbjct: 331 VEGIKLAHGGSSKDFKTTRTREQVT 355


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 296 LDSTKTRHGSLRYDFKSSASLEQVS 370
           ++  K  HG    DFK++ + EQV+
Sbjct: 650 VEGIKLAHGGSSKDFKTTRTREQVT 674


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 159 IQYPKKSKKNCSSTTITSRPRE 224
           ++YP+ SK+N   + I +  +E
Sbjct: 177 VEYPQNSKRNSEESAICAMLKE 198


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 15/58 (25%), Positives = 22/58 (37%)
 Frame = +2

Query: 164 ISEEIEEELQFHNDYFKTEREERISLNNSFRSVRSAKTTEPSHSLDSTKTRHGSLRYD 337
           +SE        H D  + +REE ++   S R      T   +  LD     H  + YD
Sbjct: 471 LSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSH-VINYD 527


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 324 ASDMTLRVPPRW 359
           ++ +T+ VPPRW
Sbjct: 670 STTLTVNVPPRW 681


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 333 MTLRVPPRWSRSLIDASLITTKSI 404
           + ++VPPRW     D S+   K +
Sbjct: 704 LQVKVPPRWIVEPTDVSVERNKHV 727


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,371
Number of Sequences: 438
Number of extensions: 3602
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)