Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p05
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032...    29   2.9  
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727...    28   6.8  
02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460     28   9.0  

>07_03_1546 + 27602598-27602917,27602995-27603052,27603130-27603252,
            27603896-27603992,27604095-27604131,27604244-27604349,
            27604547-27604604,27604705-27604802,27604911-27605030,
            27605622-27605667,27606336-27606522,27606747-27607263,
            27607361-27607453,27608101-27608286,27608364-27608574,
            27609263-27609387,27609518-27609664,27610114-27610236,
            27610445-27610799,27611076-27611305,27611785-27611877
          Length = 1109

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
 Frame = -1

Query: 463  NHSIDFSIIAVSINKICFVSVYIPHPTSSIFDEIEVIISQLPKPVLILGDFNAQ-HQAWG 287
            NH+   S+ A SIN   + ++   + T      +    SQ   P     D+  Q + A+G
Sbjct: 759  NHAASTSVHAGSINSSAYPTIQPSYSTPDPSQNLYQGTSQYAVPSNQYQDYQQQSNTAYG 818

Query: 286  STNSSYYGARILDILDSNNFCILNTGVATRRTQPHEGISA 167
            + NS+Y        + SN   +++   AT    P + + A
Sbjct: 819  TYNSTYSQQPTQMFVPSNTTPVISQPNATPAPVPQQPVKA 858


>05_03_0001 -
           7269231-7269436,7269536-7270100,7270600-7270821,
           7270913-7271155,7271227-7271481,7272017-7272370,
           7273082-7273164,7273250-7273630,7273874-7274027
          Length = 820

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -1

Query: 415 CFVSVYIPHPTSSIFDEIEVI--ISQLPKPVLILGD 314
           C V V +P+P+ S  +  E I  I  + KPVL+ GD
Sbjct: 674 CVVMVGLPYPSPSDVELTETIKYIENISKPVLVGGD 709


>02_05_1339 + 35793795-35794922,35795009-35795233,35795314-35795460
          Length = 499

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 109 SSTYDSDHYPILITLPKKLVRTKFRRPPR 23
           S  +DSD +P +    K L+R   R PPR
Sbjct: 244 SLDFDSDPWPTISDSAKDLIRRMLRSPPR 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,702,505
Number of Sequences: 37544
Number of extensions: 389350
Number of successful extensions: 803
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)