Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p05
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    50   1e-06
Z81108-5|CAB03235.1|  288|Caenorhabditis elegans Hypothetical pr...    32   0.49 
AF034258-1|AAC82328.1|  288|Caenorhabditis elegans exonuclease I...    32   0.49 
AF025468-6|AAB71043.2|  283|Caenorhabditis elegans Hypothetical ...    32   0.49 
Z81108-6|CAI79211.1|  186|Caenorhabditis elegans Hypothetical pr...    31   0.86 
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p...    31   1.1  
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p...    31   1.1  
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    31   1.1  
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle...    31   1.1  
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    31   1.1  
Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.       28   6.1  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
 Frame = -1

Query: 406 SVYIPHPTSSIFDEIEVI-----ISQLPKPVLILGDFNAQHQAWGSTNS-SYYGARILDI 245
           +VY+P P SS  +   ++     I Q     +I GD NA H AW S  S    G  + ++
Sbjct: 5   NVYVP-PRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHSEGSEDTRGRELAEL 63

Query: 244 LDSN-NFCILNTGVATRRTQPHEGISAPDLSLTTPGLASLLTWKTLSSTYDSDHYPILIT 68
           +D + +  I N  V TR       IS+PD+++ T  LA+   W TL     SDH P+ + 
Sbjct: 64  IDLHPDLIIQNEQVHTRADT--YSISSPDITICTADLATKCHWSTLYK-LGSDHIPMKLK 120

Query: 67  LPKKLVRTKFRRPPRL 20
           + +       +RP RL
Sbjct: 121 INQAATP---KRPKRL 133


>Z81108-5|CAB03235.1|  288|Caenorhabditis elegans Hypothetical
           protein R09B3.1a protein.
          Length = 288

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
 Frame = -1

Query: 682 WNCRSINS--KKSDIYHLINLYKPVIIAIQETWLK---PGYNFKVSQY---LCVREDRTD 527
           WN   + +  KKSD   ++   +P ++ + ET  K   P        Y   L V  ++  
Sbjct: 39  WNVAGLRACVKKSDFKEVL-AEEPDLVFLGETKCKEWPPEMEETFKNYTKTLVVSTEKNG 97

Query: 526 GYAGVALLVHNTIPFDHIPIANHSIDFS--IIAVSINKICFVSVYIPHPTSSIFD----- 368
           GYAGV LL        H  I +   D +  +I    +K  F+  Y+P+  + + +     
Sbjct: 98  GYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLIIAEFSKFYFIGAYVPNSGAKLVNLEKRG 157

Query: 367 EIEVIISQL------PKPVLILGDFNAQH 299
             E ++++        KPV+  GD N  H
Sbjct: 158 RWEKLLTEKMKEMDEKKPVIYGGDLNVAH 186


>AF034258-1|AAC82328.1|  288|Caenorhabditis elegans exonuclease III
           homolog protein.
          Length = 288

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
 Frame = -1

Query: 682 WNCRSINS--KKSDIYHLINLYKPVIIAIQETWLK---PGYNFKVSQY---LCVREDRTD 527
           WN   + +  KKSD   ++   +P ++ + ET  K   P        Y   L V  ++  
Sbjct: 39  WNVAGLRACVKKSDFKEVL-AEEPDLVFLGETKCKEWPPEMEETFKNYTKTLVVSTEKNG 97

Query: 526 GYAGVALLVHNTIPFDHIPIANHSIDFS--IIAVSINKICFVSVYIPHPTSSIFD----- 368
           GYAGV LL        H  I +   D +  +I    +K  F+  Y+P+  + + +     
Sbjct: 98  GYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLIIAEFSKFYFIGAYVPNSGAKLVNLEKRG 157

Query: 367 EIEVIISQL------PKPVLILGDFNAQH 299
             E ++++        KPV+  GD N  H
Sbjct: 158 RWEKLLTEKMKEMDEKKPVIYGGDLNVAH 186


>AF025468-6|AAB71043.2|  283|Caenorhabditis elegans Hypothetical
           protein T27A1.2 protein.
          Length = 283

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 392 WNIHRNKTYFINTYC-YYREINAMVC 466
           W  H+N  YFIN +C Y++++N   C
Sbjct: 17  WATHQNVHYFINLFCTYHKDVNKSPC 42


>Z81108-6|CAI79211.1|  186|Caenorhabditis elegans Hypothetical
           protein R09B3.1b protein.
          Length = 186

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
 Frame = -1

Query: 682 WNCRSINS--KKSDIYHLINLYKPVIIAIQETWLK---PGYNFKVSQY---LCVREDRTD 527
           WN   + +  KKSD   ++   +P ++ + ET  K   P        Y   L V  ++  
Sbjct: 39  WNVAGLRACVKKSDFKEVL-AEEPDLVFLGETKCKEWPPEMEETFKNYTKTLVVSTEKNG 97

Query: 526 GYAGVALLVHNTIPFDHIPIANHSIDFS--IIAVSINKICFVSVYIPH 389
           GYAGV LL        H  I +   D +  +I    +K  F+  Y+P+
Sbjct: 98  GYAGVGLLSKCAPMKVHKGIGDPEFDTAGRLIIAEFSKFYFIGAYVPN 145


>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
           protein 73, isoform b protein.
          Length = 1638

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 208 VATRRTQPHEGISAPDLSLTTPGLASL 128
           +ATR  +P +G+  PDL  TTP +++L
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNL 257


>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
           protein 73, isoform f protein.
          Length = 2140

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 208 VATRRTQPHEGISAPDLSLTTPGLASL 128
           +ATR  +P +G+  PDL  TTP +++L
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNL 257


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
           protein 73, isoform a protein.
          Length = 2488

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 208 VATRRTQPHEGISAPDLSLTTPGLASL 128
           +ATR  +P +G+  PDL  TTP +++L
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNL 257


>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine
           nucleotide exchange factorUNC-73B protein.
          Length = 1638

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 208 VATRRTQPHEGISAPDLSLTTPGLASL 128
           +ATR  +P +G+  PDL  TTP +++L
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNL 257


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine
           nucleotide exchange factorUNC-73A protein.
          Length = 2488

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 208 VATRRTQPHEGISAPDLSLTTPGLASL 128
           +ATR  +P +G+  PDL  TTP +++L
Sbjct: 231 IATRILKPSKGVKNPDLEATTPYISNL 257


>Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical
           protein F55G7.1 protein.
          Length = 395

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 487 VLYYEQVKLHQHSHLFYPLLHINIG 561
           V  YE+    +HSH F+P  H NIG
Sbjct: 124 VFVYEKPDGGEHSHTFFPHAHHNIG 148


>Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC518.3c protein.
          Length = 597

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 406 SVYIPHPTSSIFDEI--EVIISQLPKPVLILGDFNA 305
           S+ + H  S + +E+  +  I+Q   PVLI GDFN+
Sbjct: 403 SMMLTHEVSRVLEEVSKKYQITQQQVPVLICGDFNS 438


>Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical
           protein ZC518.3b protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 406 SVYIPHPTSSIFDEI--EVIISQLPKPVLILGDFNA 305
           S+ + H  S + +E+  +  I+Q   PVLI GDFN+
Sbjct: 419 SMMLTHEVSRVLEEVSKKYQITQQQVPVLICGDFNS 454


>Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical
           protein ZC518.3a protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 406 SVYIPHPTSSIFDEI--EVIISQLPKPVLILGDFNA 305
           S+ + H  S + +E+  +  I+Q   PVLI GDFN+
Sbjct: 412 SMMLTHEVSRVLEEVSKKYQITQQQVPVLICGDFNS 447


>AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 406 SVYIPHPTSSIFDEI--EVIISQLPKPVLILGDFNA 305
           S+ + H  S + +E+  +  I+Q   PVLI GDFN+
Sbjct: 412 SMMLTHEVSRVLEEVSKKYQITQQQVPVLICGDFNS 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,773,302
Number of Sequences: 27780
Number of extensions: 373066
Number of successful extensions: 838
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)