Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p05
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61030.1 68416.m06828 C2 domain-containing protein similar to...    30   1.9  
At3g60950.1 68416.m06819 C2 domain-containing protein similar to...    30   1.9  
At5g58610.1 68418.m07345 PHD finger transcription factor, putative     28   5.7  

>At3g61030.1 68416.m06828 C2 domain-containing protein similar to
           CLB1 [Lycopersicon esculentum] GI:2789434; contains Pfam
           profile PF00168: C2 domain
          Length = 592

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = -1

Query: 466 ANHSIDFSIIAVSINKICFVSVYIPHPTSSIFDEIEVIISQLPKPVLILGDFNAQHQ 296
           ++H ++  ++    +    +S Y+P+      D ++ +  +  KPV++ GD N  H+
Sbjct: 505 SDHDMEGRMVTAEFDSFYLISTYVPNSV----DGLKGLDLEKSKPVVLTGDLNCAHE 557


>At3g60950.1 68416.m06819 C2 domain-containing protein similar to
           CLB1 [Lycopersicon esculentum] GI:2789434; contains Pfam
           profile PF00168: C2 domain
          Length = 592

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = -1

Query: 466 ANHSIDFSIIAVSINKICFVSVYIPHPTSSIFDEIEVIISQLPKPVLILGDFNAQHQ 296
           ++H ++  ++    +    +S Y+P+      D ++ +  +  KPV++ GD N  H+
Sbjct: 505 SDHDMEGRMVTAEFDSFYLISTYVPNSV----DGLKGLDLEKSKPVVLTGDLNCAHE 557


>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
          Length = 1065

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 175 ISAPDLSLTTPGLASLLTWKTLSSTYDSDHY-PILITLP 62
           +  PD SLTTPG+A+  +  + + TY +     I++ LP
Sbjct: 413 LKQPDKSLTTPGMANPPSLSSENQTYSTQEMRSIVLALP 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,595,592
Number of Sequences: 28952
Number of extensions: 335803
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)