Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10p04
(506 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase ... 23 2.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 3.2
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 5.6
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 5.6
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 5.6
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 5.6
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 5.6
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 21 7.3
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 21 7.3
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 21 7.3
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 21 7.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.7
>AY855337-1|AAW47987.1| 510|Apis mellifera tyrosine hydroxylase
protein.
Length = 510
Score = 22.6 bits (46), Expect = 2.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 193 YRRKFKKGQEEE 228
YRR FKK QEE+
Sbjct: 259 YRRNFKKMQEEK 270
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 3.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 40 GLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCE 141
G C Y + PG K+ K+D F F + +CE
Sbjct: 134 GTCLY----VPPGIFKSTCKIDITWFPFDDQRCE 163
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 183 PCYFTRIPPHQMGGFTF*IQE 121
P Y+ PP MG F IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 183 PCYFTRIPPHQMGGFTF*IQE 121
P Y+ PP MG F IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 183 PCYFTRIPPHQMGGFTF*IQE 121
P Y+ PP MG F IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 5.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 183 PCYFTRIPPHQMGGFTF*IQE 121
P Y+ PP MG F IQE
Sbjct: 351 PVYYGNFPPRPMGPFVS-IQE 370
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 5.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -3
Query: 183 PCYFTRIPPHQMGGFTF*IQE 121
P Y+ PP MG F IQE
Sbjct: 340 PVYYGNFPPRPMGPFVS-IQE 359
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 7.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 183 PCYFTRIPPHQMGGF 139
P Y+ PP MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 7.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 183 PCYFTRIPPHQMGGF 139
P Y+ PP MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 7.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 183 PCYFTRIPPHQMGGF 139
P Y+ PP MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 7.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 183 PCYFTRIPPHQMGGF 139
P Y+ PP MG F
Sbjct: 118 PVYYGNFPPRPMGPF 132
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 368 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 273
FAA++ LC + + F + I+ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 368 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 273
FAA++ LC + + F + I+ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 368 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 273
FAA++ LC + + F + I+ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 368 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 273
FAA++ LC + + F + I+ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 368 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 273
FAA++ LC + + F + I+ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 368 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 273
FAA++ LC + + F + I+ L AP I
Sbjct: 427 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 458
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 368 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 273
FAA++ LC + + F + I+ L AP I
Sbjct: 495 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 526
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 368 FAALMACSLCALRTSGFILRLAIMSLSEAPTI 273
FAA++ LC + + F + I+ L AP I
Sbjct: 495 FAAMVVDRLCLIVFTLFTVLATIVILCRAPHI 526
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,142
Number of Sequences: 438
Number of extensions: 2107
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -