Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p03
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    29   0.54 
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    29   0.71 
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    28   0.94 
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    28   1.2  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    27   1.6  
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    26   3.8  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    25   6.6  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    25   8.8  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 321 TRTPAAAAELVARHVERVLARETQPQEPRTRV-SQAHKQTTPEHTELPDTPTDVQDV 488
           T  PAAA E + +  E ++++ET  Q P T   ++ H++TT E  +         DV
Sbjct: 88  TSAPAAAVE-IEKENESIISKETS-QAPETSTGAEEHQETTEESKQSVSNEVSSPDV 142


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 10/37 (27%), Positives = 25/37 (67%)
 Frame = +1

Query: 64  VYNVTDVLLVLLEVCICSQIQFSICNNKSSFLHYSFS 174
           ++++ +++ + L +   +Q++FS  NN+ +FL Y F+
Sbjct: 144 IHHLEEIISLGLPLPAINQVEFSAFNNRPTFLSYCFN 180


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -3

Query: 548 FSILQNLKLNYDYNYVLSETY-----VLYICWCIRELGVFW 441
           F  L++ ++ Y + +++   Y      LY+CWC +    FW
Sbjct: 60  FFALEHYEVPYKWIFIIEMLYYELYLTLYVCWCYKLRSDFW 100


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 246 VAVACITAAARGLRVRMSVNELCALTRTPAAAAELVARHVERVL 377
           +  ACI  A R  +V  +  E+C LT  P      V + ++R+L
Sbjct: 163 IIAACIYIACRQGKVPRTFMEICTLTNVPKKEIGRVYKTLQRML 206


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 385 RLNHKNQEREFPKHTNKPHQNTPSSRIHQ 471
           RL   N + + P H + PH N+     HQ
Sbjct: 63  RLKGSNSDSDSPHHASNPHPNSRQKHQHQ 91


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +1

Query: 103 VCICSQIQFSICNNKSSFLHYSFSSVDVHNINSL 204
           V IC Q+ F +  N    +HY F +    ++ ++
Sbjct: 267 VAICLQMGFGVTQNTEEAIHYFFRAASGQHVGAM 300


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 6/25 (24%)
 Frame = +2

Query: 224 PAGP----AIHGCGGLHNGC--GPW 280
           P GP    AI GCGG++ G   GPW
Sbjct: 30  PTGPPFKCAIFGCGGINFGTAEGPW 54


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 293 SHAQSTGRSRYASH 252
           SH +S  RSRYASH
Sbjct: 198 SHLKSKSRSRYASH 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,127
Number of Sequences: 5004
Number of extensions: 47067
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)