Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p03
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0340 + 2727135-2727205,2727470-2727639,2728418-2728506,272...    31   0.73 
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818           29   3.0  
06_01_0460 + 3276855-3277967                                           29   3.9  
03_05_0543 - 25404630-25405408,25405461-25405605                       29   3.9  
09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458...    27   9.0  
02_05_1096 + 34089572-34089880,34090405-34090470,34090723-340909...    27   9.0  
01_06_0964 + 33446750-33447868                                         27   9.0  

>01_01_0340 +
           2727135-2727205,2727470-2727639,2728418-2728506,
           2729017-2729070,2729310-2729380,2729504-2729585,
           2729678-2729774,2729902-2729972
          Length = 234

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 482 LYICWCIRELGVF-WCGLFVCLGNSRSWFLWL 390
           L ICWCI E+  + + G+    G + SW LWL
Sbjct: 120 LLICWCIIEVTRYSFYGMKESFGFTPSWLLWL 151


>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
          Length = 743

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 282 LRVRMSVNELCALTRTPAAAAELVARHVERVLARETQPQEPRTRVSQAHKQTTP 443
           LR+R +     A         +LV   ++ V   ETQP+EP    S A  +  P
Sbjct: 61  LRLRDAAFAAAAARPPSTTTVDLVTDRMDTVKTEETQPEEPSAEESLAEVKVPP 114


>06_01_0460 + 3276855-3277967
          Length = 370

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 225 LLVPPSMVAVACITAAARGLRVRMSVNELCALTRTPAAAAELVARHVERVL 377
           LL  PS+ +   +  A   L   +    L AL R PA+A    +R + RVL
Sbjct: 93  LLSHPSLPSSTLLALALARLATGLPYATLAALFRVPASAPRAASRRLRRVL 143


>03_05_0543 - 25404630-25405408,25405461-25405605
          Length = 307

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 392 LSLPGEYSLDMPRYQLXXXXXXXRQRAQLVDRHSHAQSTGRSRYASHRNHGW-RDQQEFR 216
           +SLPG+ +++     L        +   LVD H H ++ G    A +R   W R Q++F+
Sbjct: 30  ISLPGKNTINSIHLSLDQLGFKREEIRVLVDNHGHLRTRGERPVAGNR---WSRFQKDFQ 86

Query: 215 L 213
           L
Sbjct: 87  L 87


>09_06_0067 -
           20645012-20645095,20645365-20645466,20645583-20645828,
           20646042-20646236,20646343-20646636,20646952-20647134,
           20647534-20647593,20647796-20648002,20648081-20648282,
           20648367-20648494,20648759-20648842,20648955-20649134,
           20649281-20649372,20649620-20649789,20650226-20650337,
           20650451-20650554,20651262-20651371
          Length = 850

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = +3

Query: 231 VPPSMVAVACITAAARGLRVRMSVNELCALTRTPAAAAELVARHVERVLARETQPQEPRT 410
           VP   +A   + +   G   ++S+ +   L    + A ELV RH++ +L  E   Q+   
Sbjct: 211 VPVYRLADIFVASFEIGFEEQLSMLDSVDLKVRLSKATELVDRHLQSILVAEKITQKVEG 270

Query: 411 RVSQAHKQ 434
           ++S++ K+
Sbjct: 271 QLSKSQKE 278


>02_05_1096 +
           34089572-34089880,34090405-34090470,34090723-34090903,
           34091164-34091360,34091484-34091534,34091609-34091700,
           34092234-34092246,34092278-34092349,34092970-34093048,
           34093092-34093174,34093568-34093711
          Length = 428

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 240 SMVAVACITAAARGLRVRM--SVNELCALTRTPAAAAELVAR 359
           S  A A + AAAR LRVR+  +    CA    P AAA + A+
Sbjct: 13  SAAAAAALGAAARRLRVRVRAASRPYCAAPAPPRAAAAVGAQ 54


>01_06_0964 + 33446750-33447868
          Length = 372

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 240 SMVAVACITAAARGLRVRMSVNELCALTRTPAAAAELVARHVERVLARETQPQEP 404
           S+  V C+ A A  L +  +   LCA +  PA+   +VA  V  + +  + P  P
Sbjct: 29  SLATVLCLCAGAAFLLLSPTATNLCASSPDPASCQAIVADAV--LASPHSHPSRP 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,908,878
Number of Sequences: 37544
Number of extensions: 304913
Number of successful extensions: 1056
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)