Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p03
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)                      32   0.32 
SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)                   29   4.0  
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_41162| Best HMM Match : FbpA (HMM E-Value=0.043)                    27   9.2  
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_25485| Best HMM Match : ICln_channel (HMM E-Value=0.77)             27   9.2  

>SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)
          Length = 889

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = -1

Query: 103 LPTTLTEHQLHYKQYRSTYKQYQ*HTNEAY 14
           +PT L +  L+YK YR T+K+Y+  T+E+Y
Sbjct: 451 VPTYLRKVNLYYKMYRRTHKRYR-RTHESY 479


>SB_31792| Best HMM Match : DUF1373 (HMM E-Value=2.5)
          Length = 696

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -3

Query: 299 RHSHAQSTGRSRYASHRNHGWRDQQEFRLAYINELI 192
           R++H +   R  +  HR+ GW ++  +R AY+ + +
Sbjct: 569 RYTHRRHRHRHHHP-HRHRGWAERDRYREAYVTDRV 603


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 387 TQPQEPRTRVSQAHKQTTPEHTELPDTPT 473
           TQP     R S A +QTTP HT  P  PT
Sbjct: 116 TQPPAYPPRQSYALQQTTPLHTSQPLRPT 144


>SB_41162| Best HMM Match : FbpA (HMM E-Value=0.043)
          Length = 949

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 282  LRVRMSVNELCALTRTPAAAAELVARHVERVLARETQPQEPRTRVS 419
            +RV +SV+ LC  TR   +AAE V +  E  + ++ Q     +++S
Sbjct: 879  VRVVISVS-LCVFTRVSVSAAEQVIKERENTIKQQQQELTRHSQIS 923


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +2

Query: 374  TRQGDSTTRTKNESFPSTQTNHTRTHRAPGYTNRCTGRTFLIVRNYNHSLTLNFVK*RNS 553
            TR+  +TTR+      +T  +HTR  R+   T   TGR+    R++    + N  +    
Sbjct: 1080 TRRSSNTTRSHARRSSNTTRSHTR--RSSNTTRSHTGRSSNTTRSHTRR-SSNTTRGHTR 1136

Query: 554  KFKPRLQSYEAKKSN 598
            +   +L S+  + SN
Sbjct: 1137 RQVTQLASHTRRSSN 1151


>SB_25485| Best HMM Match : ICln_channel (HMM E-Value=0.77)
          Length = 673

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 548 FSILQNLKLNYDYNYVLSETYVLYICWCIRELG 450
           +++ + L L  D N  LSET++  +C CI ELG
Sbjct: 508 YALQEGLLLPPDVNKSLSETFLRRLCGCI-ELG 539


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,500,794
Number of Sequences: 59808
Number of extensions: 362415
Number of successful extensions: 1197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)