Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p03
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28450.1 68416.m03554 leucine-rich repeat transmembrane prote...    31   0.81 
At4g01020.1 68417.m00137 helicase domain-containing protein / IB...    28   4.3  
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    27   10.0 
At3g01310.1 68416.m00042 expressed protein similar to unknown pr...    27   10.0 
At1g77310.1 68414.m09004 wound-responsive protein, putative simi...    27   10.0 

>At3g28450.1 68416.m03554 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAD02501
           from [Arabidopsis thaliana]
          Length = 605

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 236 AIHGCGGLHNGCGPWIARANVCQRAVRADEN 328
           A  G   LH+GC P I   N+C   +  DE+
Sbjct: 410 AARGLAWLHHGCRPPILHQNICSSVILIDED 440


>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01485: IBR domain
          Length = 1787

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 383 GDSTTRTKNESFPSTQTN--HTRTHRAPGYTNRCT 481
           G STT  + +SFPS+ TN  ++R+ ++    N CT
Sbjct: 11  GRSTTDRRQQSFPSSSTNRYNSRSAQSSPPLNHCT 45


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +3

Query: 300 VNELCALTRTPAAAAELVARHVERVLARETQPQEPRTRVSQAHKQTTPE 446
           + ELC+ T  P     L+++ ++ V+  + QP+  R    +   +  PE
Sbjct: 126 IRELCSPTPEPPELISLISQIIDEVVCWKPQPELVRDLEPEPEPEPEPE 174


>At3g01310.1 68416.m00042 expressed protein similar to unknown
           protein GB:BAA24863 [Homo sapiens], unknown protein
           GB:BAA20831 [Homo sapiens], unknown protein GB:AAB42264
           [Caenorhabditis elegans]
          Length = 1056

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 246 PWMAGPAGIPFSLH*RINIMNVNRTK*VMQKRRLIITNRELNL 118
           PWM   AG+P + H  +  + V  TK V ++ RL+  + + NL
Sbjct: 629 PWMTDGAGLPPNAHELLREL-VKLTKNVTEQVRLLAMDEDENL 670


>At1g77310.1 68414.m09004 wound-responsive protein, putative similar
           to wound-responsive protein 14.05 (GI:16506638)
           [Castanea sativa]
          Length = 699

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 20/70 (28%), Positives = 27/70 (38%)
 Frame = +3

Query: 270 AARGLRVRMSVNELCALTRTPAAAAELVARHVERVLARETQPQEPRTRVSQAHKQTTPEH 449
           AA G +VR         T  PA    ++A   +  L  +T  Q      S+AHKQ     
Sbjct: 626 AAEGKKVRRKTEPALEETHLPAEKPLVLALKRQTHLKSKTHKQVQVHPQSKAHKQAQVHP 685

Query: 450 TELPDTPTDV 479
                TP D+
Sbjct: 686 KAKTQTPPDL 695


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,904,789
Number of Sequences: 28952
Number of extensions: 233982
Number of successful extensions: 795
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)