Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p02
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit L4|S...    64   3e-11
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   1.3  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    27   2.9  
SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.9  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   3.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   6.7  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    26   6.7  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    26   6.7  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   6.7  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   8.9  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   8.9  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   8.9  

>SPCC4G3.06c |mrpl4||mitochondrial ribosomal protein subunit
           L4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 144

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
 Frame = +1

Query: 196 TQDLMEFFDAKKNWPETN--IRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHE 369
           T  L  FF  K+  P  +   + GRAW  +ELR KS  DLH LWY  L+E+N+L+T   E
Sbjct: 35  THPLWNFFRDKQALPPPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAE 94

Query: 370 CNERVRLFP--NPERIDKVEESMNNIESVIRERNIAY 474
                   P  + ER+  V ++M  I+ V+ ER  AY
Sbjct: 95  MKRLQLTIPKASNERVLAVNKTMAAIKFVLWERQRAY 131


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 707 SLLCAFLTSLWIFSLYNLLNFFTAKLLMKPCFRYGLT-QRVFINLGVSYSDG 555
           SLL   +  L+ FS+  L  F   K  ++P + Y L  +R  I L  ++ DG
Sbjct: 33  SLLSFLIYILYTFSISGLSTFVITKYYIRPQWLYTLALRRALIKLYYNFMDG 84


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 586 NTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRD 708
           N +W+ P LKHG ++    K    L N  IH + +    +D
Sbjct: 150 NGQWITPSLKHGLLSGTMRKNL--LENGSIHEDDKGLLQKD 188


>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/102 (16%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
 Frame = -1

Query: 434 FIDSSTLSILSGFGNSRTLSLHSCSIV*SILRSFKSTYHNLCKSVLDFNRNSSSFQALPT 255
           FI ++T    + FGN+  + L    +  ++ R    + +++C     F  +  SF+ L  
Sbjct: 6   FILNATFKEFACFGNNYLIILPGIMLERNVFRHLNYSTNSICSHYQFFGGHYESFELLVV 65

Query: 254 LILVSGQFFFASKNSIKSC-VGLVVWKSLLTIQAAAVLIDFC 132
           ++     ++F+   S     +  + W   + +      + +C
Sbjct: 66  IV-----YYFSHVGSFSLAEIYRITWDKRIVLYGTTTTLVYC 102


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 310  HKLWYVLLKERNMLYTMEHECNERVRLF-PNPERIDKVEESMNNI 441
            H+LWY  L+E +  Y  +H+ +  + +  P  E ++K   +++ I
Sbjct: 1823 HELWYEGLEEASQAYFSDHDISLMIDIVKPLHETLEKGPSTLSEI 1867


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 101  FEVPLHYV--CDHKNLSTQQQLVLLKGISTQPNLRKI*WNSLMQRRIGL 241
            FE  LH V   D  + + +Q L+L   ++  P  RK+ WN L+  +  L
Sbjct: 939  FEPALHTVENFDLTDCADEQILLLSSFVNFVPLFRKVIWNLLLNNKEAL 987


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 88  IKNIFRSTTTLCMRSQKSINTAAACI-VKRDFHTTKPTQDLMEFFDAK 228
           +K++  + T L  RS    N   AC  ++++      +QD++EF DAK
Sbjct: 232 LKSVMWTFTLLISRS--CFNDDQACERIRKNLEQCSVSQDVLEFIDAK 277


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 720 DMVKVSIV-CFPHFAMDFFIIQSSKLFYCQTVDEAMF*IWSYPT 592
           DM+K+S+V C     +    +    LF+   +D +++  WS PT
Sbjct: 218 DMLKLSLVGCVKEGIVHPVTVVDYLLFHLNRIDPSLYSKWSLPT 261


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 176 SLLTIQAAAVLIDFCDRIHNVVVL 105
           S+L   A A +I+  D++HNVV+L
Sbjct: 6   SVLPSNACAEIIEGKDKVHNVVIL 29


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 427 ILQLCQFFLDLGTVEPFRCTHVP*CKAYYVLSKVHTTICANLYWTLIATR 278
           +LQ+C   L+   +E  R          YV   +H TI + L+W  ++ R
Sbjct: 427 VLQMCSVMLN--DIENSRFIDQSIHMENYVSKGLHVTILSRLFWPTLSVR 474


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 458 NVILLTTSLKQVKLENAL 511
           NV  +TTSL++VKL+N L
Sbjct: 305 NVAGMTTSLREVKLDNKL 322


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 498 WRTPCERCYKS-YRNARKVSTVRIRYT*IYEHTLGKTISKTW 620
           WR+  E+C+K+ Y    +  T R+R   ++   L  T S  W
Sbjct: 478 WRSTYEQCFKNYYETIHRYETNRLRNIALFFANLLSTDSIGW 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,359,047
Number of Sequences: 5004
Number of extensions: 77424
Number of successful extensions: 256
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)