Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10p02
(761 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52667| Best HMM Match : MRP-L47 (HMM E-Value=0.0013) 50 2e-06
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 0.77
SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_36815| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_13886| Best HMM Match : 7tm_1 (HMM E-Value=1e-08) 29 4.1
SB_44865| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_30132| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 9.5
SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_52667| Best HMM Match : MRP-L47 (HMM E-Value=0.0013)
Length = 119
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/54 (48%), Positives = 35/54 (64%)
Frame = +1
Query: 322 YVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKL 483
YVLLKERNML T+ HE + P+PER KV++SM ++ V+ ER A +L
Sbjct: 2 YVLLKERNMLDTLMHEAKRQGVPMPSPERYHKVKKSMAMVKLVLGERERAIQEL 55
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 716 WLKSLLCAFLTSLWIFSLYNLLNFFTA-KLLMKPCFRYGLTQRVFI 582
WL+S+ C S+ +Y+L+ T +LL+KP +R + FI
Sbjct: 6716 WLQSVSCCLFCSVHYIVVYSLIILQTVLRLLIKPSYRIANVDKAFI 6761
>SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +1
Query: 367 ECNERVRLFPNPERIDKVEESMNNIESVIRER--NIAYYKLETGETGERPVKDVINLIGM 540
ECN ++R+ NPE+I K+ +N+ + ++L+ G+T ++P+K VI I +
Sbjct: 155 ECNLKLRI--NPEKI-KIPIIFHNLRGYDTHFIIQLPVHELQLGKTSQQPIKRVIE-IHL 210
Query: 541 PE 546
PE
Sbjct: 211 PE 212
>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 3 HLIYLREVTKKSKTKSLKNILYRHEYCNNKKYFSKYHYIMYAITKI--YQHSSSLYC*KG 176
HL+Y + + S +++Y H + S Y+Y+MY +T Y SS Y
Sbjct: 358 HLMYHMTSYAQYNSSSDYHLMY-HMTSYARFNSSSYYYLMYHMTSYAQYNSSSDYYLMSY 416
Query: 177 FPHNQTY 197
PHN Y
Sbjct: 417 VPHNANY 423
>SB_36815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 403 ERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDV 522
ER+ K+EE+MNN+ +I E +L + ER ++
Sbjct: 21 ERLAKIEENMNNMPRIIEEYRKKMIELRSKRKDERKASNL 60
>SB_13886| Best HMM Match : 7tm_1 (HMM E-Value=1e-08)
Length = 536
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 338 NVICFTLWNMSATKGFDCSQIQKELTKLKNQ*IT*NR-LLENVILLTTSLKQVK 496
N++ L +M+ K F+ S I +L L +T N LL N ILL TSL +++
Sbjct: 64 NLVSLNL-SMNRIKSFEVSNISTDLPSLAILDMTGNNWLLSNDILLLTSLLEIR 116
>SB_44865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 9 IYLREVT---KKSKTKSLKNILYRHEYCNNKKYFSKYHYIMYAITKIYQHSSSLYC 167
+Y +++T ++K L+ +YR YC YF K ++A Q S LYC
Sbjct: 231 VYTKKITIADMETKVTKLEAPIYRVSYCTADPYFPK----VFAFIVREQSSRKLYC 282
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -3
Query: 483 KLVVSNITFSNNRFYVIH*FFNFVNSFWIWEQSNPFVALM 364
KL V ++FS + Y+ N N+ WIW+ N +A++
Sbjct: 670 KLGVGYVSFSADSRYMATKNDNMPNALWIWDMPNLTLAVL 709
>SB_30132| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 355
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 722 WTWLKSLLCAFLTSLWIFSLYNLLNF 645
+ WL+SL+CA TS ++FS + L F
Sbjct: 160 YIWLQSLICA--TSTFLFSKFEFLKF 183
>SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 18 REVTKKSKTKSLKNILYRHEYCNNK 92
RE KK K S K + +H+ C+NK
Sbjct: 4 REKKKKKKASSSKKVASKHDDCDNK 28
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,351,466
Number of Sequences: 59808
Number of extensions: 507716
Number of successful extensions: 1505
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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