Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p02
         (761 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089479-1|AAL90217.1|  271|Drosophila melanogaster AT29239p pro...   231   8e-61
AE014297-955|AAO41525.1|  271|Drosophila melanogaster CG9378-PB,...   231   8e-61
AE014297-956|AAF54390.2|  227|Drosophila melanogaster CG9378-PA,...   210   2e-54
X73219-1|CAA51687.1|  181|Drosophila melanogaster Rlc1 protein.       152   6e-37
X73218-1|CAA51686.1|  181|Drosophila melanogaster Rlc1 protein.       152   6e-37
X73217-1|CAA51685.1|  181|Drosophila melanogaster Rlc1 protein.       152   6e-37
AJ133103-1|CAB63452.1|  897|Drosophila melanogaster RFX transcri...    29   9.2  
AE014297-1144|AAF54526.2|  897|Drosophila melanogaster CG6312-PA...    29   9.2  

>AY089479-1|AAL90217.1|  271|Drosophila melanogaster AT29239p
           protein.
          Length = 271

 Score =  231 bits (565), Expect = 8e-61
 Identities = 105/193 (54%), Positives = 140/193 (72%)
 Frame = +1

Query: 181 HTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTM 360
           HT+   +DLMEFFD KKNW E  ++VGRAW+ +ELR+KSN +LH+LW+VLLKERNML TM
Sbjct: 51  HTSAVRRDLMEFFDDKKNWSENEVKVGRAWRTEELRIKSNKELHQLWFVLLKERNMLLTM 110

Query: 361 EHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGM 540
           EHECN+++ +FP+PERIDKV+ SM N+E+V+RERN AY+ LETGETGERP K V N  G+
Sbjct: 111 EHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETGERPQKAVKNAFGL 170

Query: 541 PEKYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRDFNHV 720
              Y+  E+  P FMN +W++   ++      AV +F   Y EK+++  RKA NR  N V
Sbjct: 171 QVSYKACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKAKNRSRNEV 228

Query: 721 QHLLKRFPNLDMD 759
             +L+R PN D+D
Sbjct: 229 MMILRRNPNFDLD 241


>AE014297-955|AAO41525.1|  271|Drosophila melanogaster CG9378-PB,
           isoform B protein.
          Length = 271

 Score =  231 bits (565), Expect = 8e-61
 Identities = 105/193 (54%), Positives = 140/193 (72%)
 Frame = +1

Query: 181 HTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTM 360
           HT+   +DLMEFFD KKNW E  ++VGRAW+ +ELR+KSN +LH+LW+VLLKERNML TM
Sbjct: 51  HTSAVRRDLMEFFDDKKNWSENEVKVGRAWRTEELRIKSNKELHQLWFVLLKERNMLLTM 110

Query: 361 EHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGM 540
           EHECN+++ +FP+PERIDKV+ SM N+E+V+RERN AY+ LETGETGERP K V N  G+
Sbjct: 111 EHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETGERPQKAVKNAFGL 170

Query: 541 PEKYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRDFNHV 720
              Y+  E+  P FMN +W++   ++      AV +F   Y EK+++  RKA NR  N V
Sbjct: 171 QVSYKACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKAKNRSRNEV 228

Query: 721 QHLLKRFPNLDMD 759
             +L+R PN D+D
Sbjct: 229 MMILRRNPNFDLD 241


>AE014297-956|AAF54390.2|  227|Drosophila melanogaster CG9378-PA,
           isoform A protein.
          Length = 227

 Score =  210 bits (513), Expect = 2e-54
 Identities = 95/172 (55%), Positives = 127/172 (73%)
 Frame = +1

Query: 181 HTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTM 360
           HT+   +DLMEFFD KKNW E  ++VGRAW+ +ELR+KSN +LH+LW+VLLKERNML TM
Sbjct: 51  HTSAVRRDLMEFFDDKKNWSENEVKVGRAWRTEELRIKSNKELHQLWFVLLKERNMLLTM 110

Query: 361 EHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGM 540
           EHECN+++ +FP+PERIDKV+ SM N+E+V+RERN AY+ LETGETGERP K V N  G+
Sbjct: 111 EHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETGERPQKAVKNAFGL 170

Query: 541 PEKYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKA 696
              Y+  E+  P FMN +W++   ++      AV +F   Y EK+++  RKA
Sbjct: 171 QVSYKACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKA 220


>X73219-1|CAA51687.1|  181|Drosophila melanogaster Rlc1 protein.
          Length = 181

 Score =  152 bits (368), Expect = 6e-37
 Identities = 78/172 (45%), Positives = 106/172 (61%)
 Frame = +1

Query: 181 HTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTM 360
           HT+   +DLMEFFD KKNW E  ++VGRA        +             +  NML TM
Sbjct: 6   HTSAVRRDLMEFFDDKKNWSENEVKVGRAGH-GGAAYQVQQGAAPAVVRAPQGSNMLLTM 64

Query: 361 EHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGM 540
           EHECN+++ +FP+PERIDKV+ SM N+E+V+RERN AY+ LETGETGERP K V N  G+
Sbjct: 65  EHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETGERPQKAVKNAFGL 124

Query: 541 PEKYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKA 696
              Y+  E+  P FMN +W++   ++      AV +F   Y EK+++  RKA
Sbjct: 125 QVSYKACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKA 174


>X73218-1|CAA51686.1|  181|Drosophila melanogaster Rlc1 protein.
          Length = 181

 Score =  152 bits (368), Expect = 6e-37
 Identities = 78/172 (45%), Positives = 106/172 (61%)
 Frame = +1

Query: 181 HTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTM 360
           HT+   +DLMEFFD KKNW E  ++VGRA        +             +  NML TM
Sbjct: 6   HTSAVRRDLMEFFDDKKNWSENEVKVGRAGH-GGAAYQVQQGAAPAVVRAPQGSNMLLTM 64

Query: 361 EHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGM 540
           EHECN+++ +FP+PERIDKV+ SM N+E+V+RERN AY+ LETGETGERP K V N  G+
Sbjct: 65  EHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETGERPQKAVKNAFGL 124

Query: 541 PEKYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKA 696
              Y+  E+  P FMN +W++   ++      AV +F   Y EK+++  RKA
Sbjct: 125 QVSYKACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKA 174


>X73217-1|CAA51685.1|  181|Drosophila melanogaster Rlc1 protein.
          Length = 181

 Score =  152 bits (368), Expect = 6e-37
 Identities = 78/172 (45%), Positives = 106/172 (61%)
 Frame = +1

Query: 181 HTTKPTQDLMEFFDAKKNWPETNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTM 360
           HT+   +DLMEFFD KKNW E  ++VGRA        +             +  NML TM
Sbjct: 6   HTSAVRRDLMEFFDDKKNWSENEVKVGRAGH-GGAAYQVQQGAAPAVVRAPQGSNMLLTM 64

Query: 361 EHECNERVRLFPNPERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGM 540
           EHECN+++ +FP+PERIDKV+ SM N+E+V+RERN AY+ LETGETGERP K V N  G+
Sbjct: 65  EHECNDKMEVFPSPERIDKVKISMENLETVVRERNKAYHLLETGETGERPQKAVKNAFGL 124

Query: 541 PEKYQPSEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKA 696
              Y+  E+  P FMN +W++   ++      AV +F   Y EK+++  RKA
Sbjct: 125 QVSYKACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKA 174


>AJ133103-1|CAB63452.1|  897|Drosophila melanogaster RFX
           transcription factor protein.
          Length = 897

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 610 LKHGFINSLA---VKKFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRF 741
           L H F + L    V  FR LY E   S +    N +FN V+ LL+ F
Sbjct: 541 LNHSFNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDF 587


>AE014297-1144|AAF54526.2|  897|Drosophila melanogaster CG6312-PA
           protein.
          Length = 897

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 610 LKHGFINSLA---VKKFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRF 741
           L H F + L    V  FR LY E   S +    N +FN V+ LL+ F
Sbjct: 541 LNHSFNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDF 587


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,239,284
Number of Sequences: 53049
Number of extensions: 721287
Number of successful extensions: 2177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2171
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)