Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p02
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07830.1 68414.m00849 ribosomal protein L29 family protein si...    91   6e-19
At1g04590.1 68414.m00452 expressed protein isoform contains GG a...    31   0.63 
At1g80410.1 68414.m09413 acetyltransferase-related low similarit...    31   1.1  
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1...    29   2.6  
At3g07150.1 68416.m00852 hypothetical protein                          29   3.4  
At1g66750.1 68414.m07587 cell division protein kinase, putative ...    29   3.4  
At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containi...    29   3.4  
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident...    29   3.4  
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot...    28   5.9  
At1g48050.1 68414.m05356 Ku80 family protein identical to Ku80-l...    28   5.9  
At4g12820.1 68417.m02010 F-box family protein similar to F-box p...    28   7.8  
At3g59250.1 68416.m06605 F-box family protein contains F-box dom...    28   7.8  
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain...    28   7.8  

>At1g07830.1 68414.m00849 ribosomal protein L29 family protein
           similar to GB:CAA83057 from [Saccharomyces cerevisiae]
          Length = 144

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 53/115 (46%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
 Frame = +1

Query: 127 RSQKSINTAAACIVKRDFHTTKPTQDLMEFFDAKKNWPETN-IRVGRAWKLDELRLKSNT 303
           RS+ +   AAA  ++       PT  L EFF+  ++  E   +  GR WK  ELRLKS  
Sbjct: 18  RSESTTAAAAASTIRT------PTNPLEEFFEFDRSQDEDKPVVYGRGWKASELRLKSWD 71

Query: 304 DLHKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERNI 468
           DL KLWYVLLKE+NML T       +   FPNPERI KV  SM  I+ V+ ER I
Sbjct: 72  DLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMCRIKHVLTERAI 126


>At1g04590.1 68414.m00452 expressed protein isoform contains GG
           acceptor splice site at intron 7
          Length = 381

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 2/146 (1%)
 Frame = +1

Query: 286 RLKSNTDLHKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERN 465
           R K   DLH + + L  +   +Y   +   E V+LF + E  D+     + +++V     
Sbjct: 238 RKKVGNDLHSVPWQLCLQMMRIYFRNNMLQELVKLFKDLESYDRKPPDKHIVQTVAD--- 294

Query: 466 IAYYKLETGETGERPVKDVIN-LIGMPEKYQPSEYDTPKFMNTRWVRPYLKHGFINSLAV 642
            AY  L   +  ER V    + L+G P   +PS     K      +      G +++   
Sbjct: 295 -AYELLGMLDEKERVVTKYSHLLLGTPSDDKPSRSSRKKKKPELRIPEATTEGAVDAAKA 353

Query: 643 K-KFRRLYNEKIHSEVRKAHNRDFNH 717
           + +  R  N   H E   A  + F H
Sbjct: 354 EIQEERKENLDNHQESEAATEKQFEH 379


>At1g80410.1 68414.m09413 acetyltransferase-related low similarity
           to acetyltransferase Tubedown-1 [Mus musculus]
           GI:8497318, N-TERMINAL ACETYLTRANSFERASE GB:P12945 from
           (Saccharomyces cerevisiae); contains Pfam profile
           PF00515 TPR Domain
          Length = 897

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 253 RVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEHECNERVRLFPNPERID 414
           R   A++L  L +K++   H  W+VL     +LY  + E  E ++ + N  RID
Sbjct: 58  RKTEAYELVRLGVKNDIKSHVCWHVL----GLLYRSDREYREAIKCYRNALRID 107


>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 964

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/56 (25%), Positives = 30/56 (53%)
 Frame = +1

Query: 403 ERIDKVEESMNNIESVIRERNIAYYKLETGETGERPVKDVINLIGMPEKYQPSEYD 570
           ER+ K+E  ++ ++   +E N+ + K ++  T  R  K+ I+ + +  +    EYD
Sbjct: 520 ERLQKIENDLSTLKQKQKELNVQWEKEKSLMTKIRSFKEEIDRVNLEIESAEREYD 575


>At3g07150.1 68416.m00852 hypothetical protein
          Length = 199

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -1

Query: 299 LDFNRNSSSFQALPTLILVSGQFFFASKNSIKSCVGLVVWKSLLTIQAA 153
           LDF   +++F   P+ + ++G F     + + +C   V W+SLLT  +A
Sbjct: 31  LDFRAIAAAFGLEPSTVKLNGHFISRGFDLVATC---VTWQSLLTFFSA 76


>At1g66750.1 68414.m07587 cell division protein kinase, putative
           similar to cell division protein kinase 7 [Homo sapiens]
           SWISS-PROT:P50613
          Length = 348

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = +1

Query: 244 TNIRVGRAWKLDELRLKSNTDLHKLWYVLLKERNMLYTMEH-ECNERVRLFPNPERIDKV 420
           T+ + G+   + ++RL +  +   + +  L+E  +L  + H    E +  FP+   +  V
Sbjct: 31  TDTKTGKTVAVKKIRLGNQKE--GVNFTALREIKLLKELNHPHIVELIDAFPHDGSLHLV 88

Query: 421 EESMN-NIESVIRERNI 468
            E M  ++E+VIR+RNI
Sbjct: 89  FEYMQTDLEAVIRDRNI 105


>At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1133

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 12  YLREVTKKSKTKSLKNILYRHEYCNNKKYFSKYHY 116
           + RE+ K ++  + KNI++  E C+++     Y Y
Sbjct: 617 FKREIEKPNRENACKNIIFSEEICSSESCGESYDY 651


>At1g50030.1 68414.m05614 target of rapamycin protein (TOR) identical
            to pTOR [Arabidopsis thaliana] GI:12002902; contains Pfam
            profiles PF00454 Phosphatidylinositol 3- and 4-kinase,
            PF02259 FAT domain, PF02260 FATC domain
          Length = 2481

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 310  HKLWYVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERN-IAYYKLE 486
            H++W+  L+E + LY  EH     +++   P   D ++E +    + I+ER  I  Y+ E
Sbjct: 1929 HEMWHEALEEASRLYFGEHNIEGMLKVL-EPLH-DMLDEGVKKDSTTIQERAFIEAYRHE 1986

Query: 487  TGETGE 504
              E  E
Sbjct: 1987 LKEAHE 1992


>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
            similar to DNA helicase HEL308 [Homo sapiens]
            GI:19110782; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00476: DNA polymerase family A
          Length = 1548

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -3

Query: 723  LDMVKVS--IVCFPHFAMDFFIIQSSKLF 643
            LD+++ S  ++ FP+ A  FFII+ ++LF
Sbjct: 1214 LDLLRYSEWLIAFPYIAFCFFIIKDNRLF 1242


>At1g48050.1 68414.m05356 Ku80 family protein identical to Ku80-like
           protein [Arabidopsis thaliana] GI:12006422; contains
           Pfam profiles: PF02197 Regulatory subunit of type II PKA
           R-subunit, PF02735: Ku70/Ku80 beta-barrel domain,
           PF03731: Ku70/Ku80 N-terminal alpha/beta domain,
           PF03730: Ku70/Ku80 C-terminal arm
          Length = 680

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +1

Query: 322 YVLLKERNMLYTMEHECNERVRLFPNPERIDKVEESMNNIESVIRERNI 468
           + L +ERN+ + +EH  ++++ L P  E  D      N  + ++++ ++
Sbjct: 629 FKLCQERNLSHLLEHFMSKKITLIPKSEAADSDIVDENAGDFIVKQESM 677


>At4g12820.1 68417.m02010 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 442

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 574 PKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHN 702
           P+FM+  W RPYL   F  ++  KK ++   E   SE +K ++
Sbjct: 21  PRFMHLSWKRPYLTRVFDLAVIQKKQKK---EMSDSEEKKCND 60


>At3g59250.1 68416.m06605 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 425

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 653 EDCIMKKSIAK*GKHTIETLTMSNIYSNV 739
           EDC  K +    G H +E L ++N+YSNV
Sbjct: 143 EDCFEKLTS---GCHVLEELVLNNVYSNV 168


>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain; similar
           to clathrin assembly protein AP180 (GI:6492344) [Xenopus
           laevis]
          Length = 571

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 48  SLKNILYRHEYCNNKKYFSKYHYIMYAITKIYQHSSSLYC 167
           +L+ +LYR   C  +   +  H I YA+  + + S  +YC
Sbjct: 194 ALQQLLYRLIGCRPEGAANHNHVIQYALALVLKESFKVYC 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,583,097
Number of Sequences: 28952
Number of extensions: 364627
Number of successful extensions: 1014
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)