Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10p01
(274 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0628 - 8266494-8266501,8266578-8266875,8268055-8268313,826... 31 0.17
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190... 29 0.67
03_03_0044 - 14021874-14022050,14022235-14022390,14023024-140232... 26 3.6
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249... 26 4.7
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 25 6.3
11_03_0067 - 9535565-9536157,9536446-9536757,9536948-9537212,953... 25 8.3
07_01_1154 - 10850206-10850318,10850528-10850658,10850998-108511... 25 8.3
05_01_0342 - 2691294-2691441,2691589-2691667,2691737-2691799,269... 25 8.3
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726... 25 8.3
>04_01_0628 -
8266494-8266501,8266578-8266875,8268055-8268313,
8268892-8269052,8269553-8269884,8270947-8271265,
8271335-8271420,8271600-8271684
Length = 515
Score = 30.7 bits (66), Expect = 0.17
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 50 ESQLKGLAKYFNSQTNRGRLNTARA-TYAVMGAVILYF 160
+ L+G Y++ Q N RLN A T AV+GA IL +
Sbjct: 101 DRSLRGTVVYYDGQMNDSRLNVGLACTAAVVGAAILNY 138
>08_01_0233 +
1876940-1877509,1907940-1908195,1908290-1908589,
1908777-1908939,1908958-1908994,1910122-1910742
Length = 648
Score = 28.7 bits (61), Expect = 0.67
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +2
Query: 14 FQIRMAGDSSVDESQLKGLAKYFNSQTNRGRLNT 115
F ++M GD VD+ KGL Y N GRL T
Sbjct: 465 FNLKMKGDDGVDKDFSKGLLPY-NVVCRTGRLET 497
>03_03_0044 -
14021874-14022050,14022235-14022390,14023024-14023203,
14023816-14024074,14024178-14024416,14025180-14025260,
14025320-14025328
Length = 366
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 21 SGWPETLLSMNPSSKA*QNTSTVRQTEED 107
SGW ETLL+ +P+ + ++R+ ED
Sbjct: 131 SGWFETLLNSHPNVSSNGEIFSIRERRED 159
>03_06_0617 -
35124114-35124148,35124243-35124335,35124415-35124919,
35125039-35125238,35125514-35125604,35125699-35126769
Length = 664
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 23 RMAGDSSVDESQLKGLAKYFNSQTNRGRLNTAR 121
R +GDS+++ESQ + L K + ++ G+ T++
Sbjct: 569 RTSGDSTIEESQKQKLQKNKSKASSGGQKKTSK 601
>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -1
Query: 265 CSHDFNYVLYNLTIPYRNMLINF---ACNSFLGFRFQCEVKDDC 143
CS+ + N+ PYR++ +N C FL + C D+C
Sbjct: 1890 CSYFLRGLCTNIACPYRHVKVNLNAPVCEDFL--KGYCAYGDEC 1931
>11_03_0067 -
9535565-9536157,9536446-9536757,9536948-9537212,
9537810-9538048,9538400-9538568,9539216-9539410,
9539649-9539766,9542140-9542315
Length = 688
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 190 YKQNLLACFCKGLLSYIVHN*NHVNK 267
YK LAC+CK + + N + VNK
Sbjct: 159 YKGEELACYCKKAENKVEENSDDVNK 184
>07_01_1154 -
10850206-10850318,10850528-10850658,10850998-10851110,
10851221-10851307,10852873-10853000,10853132-10853210,
10853262-10853354,10854211-10854295,10855000-10855085,
10855183-10855375,10856891-10856970
Length = 395
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1
Query: 220 YRNMLINFACNSFLGFRFQCEVKD 149
++ L+NF C FL F C D
Sbjct: 146 WKKQLLNFFCEFFLNFSKHCSYTD 169
>05_01_0342 -
2691294-2691441,2691589-2691667,2691737-2691799,
2692852-2692917,2694939-2695004,2695194-2695283,
2695376-2695463,2695552-2695629,2695732-2695824,
2695907-2696024,2696418-2696539,2696633-2696930,
2697645-2697649
Length = 437
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 238 YNLTIPYRNMLINFACNSFLGFRFQCEVK 152
Y LT+ LI F+C +GFR + K
Sbjct: 373 YGLTVMMAWRLIFFSCRFLIGFRIGLQAK 401
>01_01_0920 +
7264498-7264573,7264705-7264745,7265339-7265408,
7265500-7265648,7266143-7266238,7266326-7266396,
7266510-7266571,7266651-7266714,7267608-7267692,
7267777-7267903,7268016-7268080,7268739-7268796,
7268927-7269066,7269624-7269693,7269910-7269981,
7270188-7270234,7270468-7270566
Length = 463
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 47 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 160
+ L G A+Y + T+ G + R +G V+LYF
Sbjct: 169 ENKNLTGTARYASCNTHLGVEQSRRDDLESLGYVLLYF 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,879,171
Number of Sequences: 37544
Number of extensions: 87017
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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