Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10p01
         (274 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31884| Best HMM Match : Rhabdo_M1 (HMM E-Value=0.36)                26   4.1  
SB_12476| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      25   7.2  
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)            25   9.5  
SB_20515| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)                 25   9.5  

>SB_31884| Best HMM Match : Rhabdo_M1 (HMM E-Value=0.36)
          Length = 456

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 163 TET*IQEMNYKQNLLACFCKGLLSYIV 243
           T+   +EM+ K+NLLA FCK L+ Y V
Sbjct: 28  TDAKAEEMSRKRNLLAGFCK-LIIYNV 53


>SB_12476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 163 TET*IQEMNYKQNLLACFCKGLLSYIV 243
           T+   +EM+ K+NLLA FCK L+ Y V
Sbjct: 28  TDAKAEEMSRKRNLLAGFCK-LIIYNV 53


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 35   DSSVDESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYFT 163
            +SSV +  LK +++Y + ++   +L +   T+AV  A I ++T
Sbjct: 2559 NSSVVKEYLKMMSQYKDQRSEHAQLLSWNETFAVWKAYIDFYT 2601


>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
          Length = 1197

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 14   FQIRMAGDSSVDESQLKGLAKYFNSQT 94
            F   M GD SV   + KG+ +Y N +T
Sbjct: 1044 FNSTMLGDISVISDRRKGIGEYVNMRT 1070


>SB_20515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = -2

Query: 138 ITAYVALAVFNLPLFV*LLKY------FAKPLSWDSST 43
           + ++V   VFNLPLF+ +L+Y      F  P  W S T
Sbjct: 150 VGSWVYAVVFNLPLFI-VLEYEQKGIDFRCPEKWSSET 186


>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
          Length = 1012

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 205 INFACNS-FLGFRFQCEVKDDCSH 137
           +N  CN+ + G  F C++ D CSH
Sbjct: 672 VNCTCNNGYEGDGFYCQMIDRCSH 695


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,080,948
Number of Sequences: 59808
Number of extensions: 111053
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 16,821,457
effective HSP length: 67
effective length of database: 12,814,321
effective search space used: 294729383
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)