Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o23
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    42   2e-05
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    31   0.057
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    25   2.8  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   3.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    24   4.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   4.9  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    23   8.6  

>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 41.9 bits (94), Expect = 2e-05
 Identities = 18/36 (50%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +1

Query: 1   DVIVVGRGITAA-KNPEVQAVAYKDALWKCYIKRIS 105
           D+I+VGRG+  A +NP V+A  Y++A WK Y +R+S
Sbjct: 227 DIIIVGRGVYGAGRNPVVEAKRYREAGWKAYQQRLS 262


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 30.7 bits (66), Expect = 0.057
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 295 ILITKFGMLVLDPIMEDFNSAFKKHIVSGYFVSQI*FLQYWHLGNY 158
           I + ++G    D  +  F + FK+H V+ +FV QI     W L +Y
Sbjct: 172 IFLYRYGKNCFDIPIPTFGTLFKEHAVAPFFVFQIFCCVLWCLDDY 217


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 268 VLDPIMEDFNSAFKKHIVSGYFV 200
           V D + + F   FKKH++  Y V
Sbjct: 305 VQDSVYDKFIELFKKHVIQDYIV 327


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 206 VSTNYVLFKS*IEIFHNWVQYKHSEFCDKN 295
           ++T+   F S ++ F  ++  K++EFC K+
Sbjct: 386 ITTDSSYFNSLLKEFEQFILQKNAEFCSKH 415


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 242  EIFHNWVQYKHSEFCDKNKI 301
            EI   W+  KH  +C+ N++
Sbjct: 1209 EIGEIWINGKHGSYCENNEL 1228


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = -1

Query: 256 IMEDFNSAFKKHIVSGYFVS 197
           +++++  A ++HIV+G F+S
Sbjct: 793 LLQEYELAVRQHIVTGLFIS 812


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 205 FVSQI*FLQYWHLGNYLTMLKL 140
           ++ QI  LQYW  G Y   L L
Sbjct: 385 YLEQISALQYWKQGQYENSLSL 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,193,648
Number of Sequences: 5004
Number of extensions: 19848
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)