Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o23
         (325 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867...    33   0.051
01_07_0190 + 41880032-41880319,41880501-41880521,41880992-418810...    32   0.12 
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765...    26   7.8  

>01_07_0191 +
           41885121-41885909,41886152-41886190,41886701-41886784,
           41887331-41887413,41887501-41887588,41887736-41887990,
           41888275-41888403
          Length = 488

 Score = 33.1 bits (72), Expect = 0.051
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 1   DVIVVGRGITAAKNPEVQAVAYKDALWKCYIKRIS 105
           D+I+VGRGI  A NP   A  Y+   W  Y   +S
Sbjct: 454 DIIIVGRGIIRANNPAETAREYRIQGWHAYQSSLS 488


>01_07_0190 +
           41880032-41880319,41880501-41880521,41880992-41881075,
           41881177-41881259,41881341-41881428,41881545-41881799,
           41882530-41882658
          Length = 315

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 1   DVIVVGRGITAAKNPEVQAVAYKDALWKCY 90
           D+I+VGRGI  A NP   A  Y+   W  Y
Sbjct: 281 DIIIVGRGIIKASNPAETAREYRIQGWGAY 310


>08_02_1423 +
           26975466-26975508,26976253-26976365,26976505-26976561,
           26976607-26976801,26976912-26977060,26977145-26977307,
           26977865-26977957,26978075-26978158,26978865-26979004,
           26979093-26979192
          Length = 378

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 209 ILCITDIVFTILAFRKL 159
           ILC TD ++ +L FRKL
Sbjct: 282 ILCKTDCMYALLVFRKL 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,649,017
Number of Sequences: 37544
Number of extensions: 98330
Number of successful extensions: 251
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)