Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o23
         (325 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)                    46   9e-06
SB_37268| Best HMM Match : Cation_ATPase_N (HMM E-Value=1.6)           29   0.87 
SB_11702| Best HMM Match : Cation_ATPase_N (HMM E-Value=1.6)           29   0.87 
SB_49295| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.1  
SB_37413| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  

>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
          Length = 474

 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 19/35 (54%), Positives = 27/35 (77%)
 Frame = +1

Query: 1   DVIVVGRGITAAKNPEVQAVAYKDALWKCYIKRIS 105
           DVI+VGRGI  A+NP   A+ YK+A +K Y++RI+
Sbjct: 439 DVIIVGRGIYEAENPASAAIEYKEAAYKAYLQRIT 473


>SB_37268| Best HMM Match : Cation_ATPase_N (HMM E-Value=1.6)
          Length = 239

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 283 KFGMLVLDPIMEDFNSAFKKHIVSGYFVSQI*FLQYWHLGNY 158
           KFG   L+  + DF   FK+   + +FV Q+  +  W L  Y
Sbjct: 177 KFGTNELEMTVPDFMELFKERATAPFFVFQVFCVGLWCLDEY 218


>SB_11702| Best HMM Match : Cation_ATPase_N (HMM E-Value=1.6)
          Length = 239

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 283 KFGMLVLDPIMEDFNSAFKKHIVSGYFVSQI*FLQYWHLGNY 158
           KFG   L+  + DF   FK+   + +FV Q+  +  W L  Y
Sbjct: 177 KFGTNELEMTVPDFMELFKERATAPFFVFQVFCVGLWCLDEY 218


>SB_49295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 171 CQYCKNYICDTKYPLTM 221
           C +  NYIC+ +YP T+
Sbjct: 164 CPHSANYICNVQYPQTL 180


>SB_37413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 292 LITKFGMLVLDPIMEDFNSAFKKHIVSGYFV 200
           +IT F M  + P   D+      HI+SGY V
Sbjct: 67  VITFFTMYTMSPAQPDWKPTECTHIMSGYVV 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,188,083
Number of Sequences: 59808
Number of extensions: 129079
Number of successful extensions: 230
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)