Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o23
         (325 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54470.1 68416.m06026 uridine 5'-monophosphate synthase / UMP...    36   0.005
At1g07450.1 68414.m00795 tropinone reductase, putative / tropine...    28   1.2  
At4g28690.1 68417.m04099 expressed protein                             28   1.6  
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ...    27   3.8  
At1g53270.1 68414.m06037 ABC transporter family protein contains...    27   3.8  
At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1) domain...    26   6.7  
At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00...    26   6.7  
At3g66652.1 68416.m00776 fip1 motif-containing protein contains ...    25   8.8  
At3g24740.1 68416.m03106 expressed protein                             25   8.8  
At3g07630.2 68416.m00914 prephenate dehydratase family protein s...    25   8.8  
At3g07630.1 68416.m00913 prephenate dehydratase family protein s...    25   8.8  
At2g13610.1 68415.m01500 ABC transporter family protein                25   8.8  
At1g71350.1 68414.m08235 eukaryotic translation initiation facto...    25   8.8  

>At3g54470.1 68416.m06026 uridine 5'-monophosphate synthase / UMP
           synthase (PYRE-F) (UMPS) identical to SP|Q42586 Uridine
           5'-monophosphate synthase (UMP synthase) [Includes:
           Orotate phosphoribosyltransferase (EC 2.4.2.10)
           (OPRtase); Orotidine 5'- phosphate decarboxylase (EC
           4.1.1.23) (OMPdecase)] {Arabidopsis thaliana}
          Length = 476

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 1   DVIVVGRGITAAKNPEVQAVAYKDALWKCYIKRIS 105
           D+I+VGRGI  A+NP   A  Y+   W  Y+++ S
Sbjct: 441 DIIIVGRGIIKAENPAETAHEYRVQGWNAYLEKCS 475


>At1g07450.1 68414.m00795 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 260

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -1

Query: 295 ILITKFGMLVLDPIME----DFNSAFKKHIVSGYFVSQI 191
           ILI   G  +L P +E    DF+S    ++ S Y++SQ+
Sbjct: 91  ILINNVGKYILKPTLESTAEDFSSLMATNLESAYYISQL 129


>At4g28690.1 68417.m04099 expressed protein 
          Length = 448

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 171 CQYCKNYICDTKYPLTMCF 227
           C+ C  Y+CDT+ P T  F
Sbjct: 116 CEMCHCYVCDTRAPCTYWF 134


>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 519

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 168 KCQYCKNYICDTKYPLTMCFLKAELK 245
           KCQ+C++ + D  Y  ++C    +L+
Sbjct: 89  KCQFCRSPLVDLMYHCSICNFSVDLR 114


>At1g53270.1 68414.m06037 ABC transporter family protein contains
           similarity to ABC transporter GI:10280532 from [Homo
           sapiens]
          Length = 590

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 220 IVSGYFVSQI*FLQYWHLGNYLTMLKLSF 134
           + SGYF+++     YW   +YL++ K  F
Sbjct: 507 LFSGYFIAKDRIPVYWEFMHYLSLFKYPF 535


>At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein  Pfam profile PF00564: PB1
           domain
          Length = 720

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/45 (17%), Positives = 25/45 (55%)
 Frame = +3

Query: 171 CQYCKNYICDTKYPLTMCFLKAELKSSIIGSNTSIPNFVIRIKSS 305
           C Y   +I    +  ++C++  + +  ++  N+S+P+ + R+ ++
Sbjct: 79  CSY-GGHILPRPHDKSLCYMGGDTRIVVVDRNSSLPSLIARLSNT 122


>At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 479

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 134 LEQDNHSNLPDILLI 90
           ++QD  SNLPD+LLI
Sbjct: 10  IQQDRLSNLPDVLLI 24


>At3g66652.1 68416.m00776 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 980

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 311 FERRFYSYHKIRNACIGPNYGRFQFSF 231
           F+RR+       NACI P+ G  Q+ +
Sbjct: 121 FQRRWTRNASANNACIDPSLGMSQYRY 147


>At3g24740.1 68416.m03106 expressed protein
          Length = 354

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 180 CKNYICDTKYPLTMC 224
           C++YICDT Y  + C
Sbjct: 48  CRSYICDTSYRHSNC 62


>At3g07630.2 68416.m00914 prephenate dehydratase family protein
           similar to P-protein: chorismate mutase, prephenate
           dehydratase GB:P43900 [Haemophilus influenzae]
          Length = 381

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 310 LKEDFILITKFGMLVLDPIMEDFNSAFKKHIV 215
           +++D   +T+F ML  +PI+   N  FK  IV
Sbjct: 260 IQDDCDNVTRFLMLAREPIIPGTNRLFKTSIV 291


>At3g07630.1 68416.m00913 prephenate dehydratase family protein
           similar to P-protein: chorismate mutase, prephenate
           dehydratase GB:P43900 [Haemophilus influenzae]
          Length = 381

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 310 LKEDFILITKFGMLVLDPIMEDFNSAFKKHIV 215
           +++D   +T+F ML  +PI+   N  FK  IV
Sbjct: 260 IQDDCDNVTRFLMLAREPIIPGTNRLFKTSIV 291


>At2g13610.1 68415.m01500 ABC transporter family protein
          Length = 649

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 220 IVSGYFVSQI*FLQYWHLGNYLTMLKLSF 134
           + SGYF+S      YW   +Y+++ K  F
Sbjct: 545 LFSGYFISNHEIPGYWIFMHYISLFKYPF 573


>At1g71350.1 68414.m08235 eukaryotic translation initiation factor
           SUI1 family protein weak similarity to SP|P41214 Ligatin
           (Hepatocellular carcinoma-associated antigen 56) {Homo
           sapiens}; contains Pfam profile PF01253: Translation
           initiation factor SUI1
          Length = 597

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 307 KEDFILITKFGMLVLDPIMED--FNSAFKK 224
           KE+ +  T   M+VLDPI+ D  F  A KK
Sbjct: 437 KENLVKPTNKSMVVLDPILCDALFKGAIKK 466


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,867,529
Number of Sequences: 28952
Number of extensions: 92161
Number of successful extensions: 261
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)