Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10o22
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 30 0.28
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 29 0.37
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 28 0.86
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 26 3.5
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 3.5
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 6.1
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 8.0
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 8.0
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 29.9 bits (64), Expect = 0.28
Identities = 19/90 (21%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +1
Query: 259 SRELARVEDEIATLRTVLQSKIRQSSDLKRKLGI-TVWKEITEDVNQGLKNVKESQVYQK 435
++E +E++ + ++Q + +++KL +++++ E N+G +++ S ++
Sbjct: 135 AKERVVLENQFSKTAGIVQGITGEFLRVEKKLDEEALYQDLKELYNEGFRSISVSLMHSY 194
Query: 436 TESVIKTTAEKTSSIIGGITAGVSSKLGQM 525
T + + EK + IG +SSKL M
Sbjct: 195 TYPLHEEVVEKIAKRIGFTDISLSSKLTPM 224
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 29.5 bits (63), Expect = 0.37
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +1
Query: 289 IATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV---KESQVYQKTESVIKTT 459
+ +L T+L +R +SDL + G+ +I + +N ++N ES + + SVIK
Sbjct: 176 VVSLVTILVPPMRMASDLVGQSGLDHLNKIMQSLNFSVENFFPSDESVSFSSSSSVIKRM 235
Query: 460 AEKTSSII 483
++ S++
Sbjct: 236 FKEHESVL 243
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 28.3 bits (60), Expect = 0.86
Identities = 30/132 (22%), Positives = 53/132 (40%)
Frame = +1
Query: 91 YFSFISHRKSFSL*NMSGVQTAEEAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSREL 270
Y SFI M G + + + AGD H+P + + +R E E+
Sbjct: 226 YESFIEDEYPLHPTVMKGEEVTQPS-GWVASAGDFHSPPINPKILAIDCEMVRTENGLEI 284
Query: 271 ARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVI 450
ARV + ++ S + +T + ITE + L+NV + V +S +
Sbjct: 285 ARVTIVDMKSEVIYDEFVKPESPVTDY--VTQYSGITE---EKLRNV--TTVLSDVQSYL 337
Query: 451 KTTAEKTSSIIG 486
K T + + ++G
Sbjct: 338 KKTVDNNTVLLG 349
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 166 MSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIAT 297
++G G++ T ELA L P +L E+ + L E++I T
Sbjct: 88 LTGAGLSSVAKTRRELASLVPADKFKLHPEFVKSLHPRENKIVT 131
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 217 GLTPEQADQLRAE--WSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEI 378
GL E + + R+ W E+A + L+ +++SK+ SSD+ L W E+
Sbjct: 270 GLKEESSHEPRSSQHWKNEVAMKD----LLKNLIKSKLESSSDVNTPLIFDPWPEL 321
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 415 ESQVYQKTESVIKTTAEKTSSIIGGITAGVSSK 513
ES V+ K E++ + + +T + GIT +SSK
Sbjct: 806 ESFVFNKLEAMAQLPSPRTPVLDAGITQALSSK 838
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 8.0
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +3
Query: 255 MESRASPCRR*NRDFENCTAKQDPSK--LGLKT*TWHHGVERDHRGRQSGFEKRQRKPSI 428
+ S +S + +RD+ + +++ +G + H+G ER R R+ + R+ + S
Sbjct: 7 LSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESDFRRHRESR 66
Query: 429 PKN*ICDKNDRREDVFD 479
++ D+ RRE +D
Sbjct: 67 ERSYREDERPRRERRYD 83
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 8.0
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Frame = +1
Query: 229 EQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWK-EITEDVNQGLK 405
E +L A W + + ++ E+A L+ L S+ +++ +L + I+E+ + L+
Sbjct: 282 ETQKRLTALWESKSSELQSEVAALQEKLTSQQSLYNNVTEELNNNKQQLLISENSLRELQ 341
Query: 406 NVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSE-SFRSI 552
+S V + V+K + S G+ + ++ KL ++N E SF +
Sbjct: 342 EKYDSVVSEL--QVVKENKNTSVSAGVGLFSPLAQKLSAVQNPEFSFTKV 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,460
Number of Sequences: 5004
Number of extensions: 41877
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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