Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10o22
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06530.1 68414.m00692 myosin heavy chain-related similar to m... 37 0.011
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 35 0.045
At2g38720.1 68415.m04755 microtubule associated protein (MAP65/A... 34 0.079
At1g37020.1 68414.m04616 Ulp1 protease family protein 31 0.42
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 31 0.56
At1g59453.1 68414.m06679 transcription factor-related weak simil... 31 0.56
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ... 30 1.3
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ... 30 1.3
At2g46180.1 68415.m05742 intracellular protein transport protein... 30 1.3
At1g34320.1 68414.m04259 expressed protein contains Pfam domain ... 30 1.3
At5g48310.1 68418.m05968 expressed protein 29 1.7
At1g02420.1 68414.m00189 pentatricopeptide (PPR) repeat-containi... 29 1.7
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 29 2.2
At4g26050.1 68417.m03750 leucine-rich repeat family protein cont... 29 2.2
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 29 2.2
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb... 29 2.2
At1g02330.1 68414.m00178 expressed protein contains similarity t... 29 2.2
At4g10270.1 68417.m01688 wound-responsive family protein similar... 29 3.0
At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putati... 28 3.9
At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative (CH... 28 3.9
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 28 3.9
At1g33970.1 68414.m04212 avirulence-responsive protein, putative... 28 5.2
At5g46860.1 68418.m05774 syntaxin 22 (SYP22) (VAM3) identical to... 27 6.8
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 27 6.8
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 27 6.8
At4g33390.1 68417.m04746 hypothetical protein contains Pfam prof... 27 9.0
At3g28320.1 68416.m03538 hypothetical protein similar to At14a (... 27 9.0
At2g26570.1 68415.m03187 expressed protein contains Pfam profile... 27 9.0
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 27 9.0
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 27 9.0
>At1g06530.1 68414.m00692 myosin heavy chain-related similar to
myosin heavy chain (GI:1408194) {Placopecten
magellanicus}; similar to Myosin heavy chain, clone 203
(Fragment) (SP:P39922){Hydra attenuata}; contains one
transmembrane domain
Length = 323
Score = 36.7 bits (81), Expect = 0.011
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +1
Query: 232 QADQLRAEWSRE---LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGL 402
+A++LR+E S++ + +E E+A LRTV + ++ +L+ KLG KE+ E +
Sbjct: 131 EAEKLRSEISQKGGGIEELEKEVAGLRTVKEENEKRMKELESKLGALEVKELDEKNKKFR 190
Query: 403 KNVKESQVYQKTESVIKTTAEKTSSIIGGITAG 501
+ + E + EK S+ + G
Sbjct: 191 AEEEMREKIDNKEKEVHDLKEKIKSLESDVAKG 223
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 34.7 bits (76), Expect = 0.045
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 247 RAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKL 354
+ EW E +++ DEI +L+T L S R S DL++KL
Sbjct: 211 KKEWEEEKSKLLDEIYSLQTKLDSVTRISEDLQKKL 246
>At2g38720.1 68415.m04755 microtubule associated protein
(MAP65/ASE1) family protein low similarity to myosin
[Schistosoma japonicum] GI:3941320; contains Pfam
profile PF03999: Microtubule associated protein
(MAP65/ASE1 family)
Length = 587
Score = 33.9 bits (74), Expect = 0.079
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +1
Query: 229 EQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKN 408
E+ + RAE R LA+ E EIA+L + L K+ S K+K G KE V L++
Sbjct: 50 EKTRKFRAELQRSLAQAEAEIASLMSALGEKV---SFAKKKEGSL--KEQISSVKPVLED 104
Query: 409 --VKESQVYQKTESVIKTTAEKTSSIIG 486
+K+ + ++ + AE TS+I G
Sbjct: 105 LLMKKDRRRKELSETLNQIAEITSNIAG 132
>At1g37020.1 68414.m04616 Ulp1 protease family protein
Length = 611
Score = 31.5 bits (68), Expect = 0.42
Identities = 21/75 (28%), Positives = 36/75 (48%)
Frame = +1
Query: 280 EDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTT 459
EDE LQ KI+ ++ K+K + K+ ++ + + VKE +V T V+K T
Sbjct: 253 EDETPNKELELQLKIKDATKGKKKKVAIMPKKASKIPKKKMAKVKEMKV--STPKVLKKT 310
Query: 460 AEKTSSIIGGITAGV 504
+ +G +T V
Sbjct: 311 MRRDDDYVGDVTEKV 325
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 31.1 bits (67), Expect = 0.56
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +1
Query: 148 QTAEEAMS-GTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKI 324
Q + ++S G+G +P GL Q Q+R+E ELA I L TV+ ++
Sbjct: 2385 QAIDSSLSKGSGKPRGSGSPFRCIGLGITQ--QMRSEKDEELAAARLRIEELETVVSTRQ 2442
Query: 325 RQSSDLKRKLGITVWKEITEDVNQGLKNVKES 420
++ L KL +T D+N+ L VK++
Sbjct: 2443 KEIFLLNSKLAKV--DSMTHDINRVLLGVKQN 2472
>At1g59453.1 68414.m06679 transcription factor-related weak similarity
to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
Length = 1729
Score = 31.1 bits (67), Expect = 0.56
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 370 KEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFR 546
K ++D N+ ++N S +K S++KT E SII ++S NSESF+
Sbjct: 907 KSNSKDKNKAVENSPSSSKKRKRASLVKTKGEGVKSIIVDGQKVLNSDAIDASNSESFQ 965
>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 765
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 229 EQADQLRAEWSRELARVEDEIATLRTVLQSK 321
E AD+L E RE++R+ DE+ LR ++SK
Sbjct: 585 ELADRLIEEKDREISRLVDEMTNLRKSMESK 615
>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 788
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 229 EQADQLRAEWSRELARVEDEIATLRTVLQSK 321
E AD+L E RE++R+ DE+ LR ++SK
Sbjct: 585 ELADRLIEEKDREISRLVDEMTNLRKSMESK 615
>At2g46180.1 68415.m05742 intracellular protein transport protein
USO1-related similar to Intracellular protein transport
protein USO1 (Swiss-Prot:P25386) [Saccharomyces
cerevisiae]
Length = 725
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 235 ADQLRAEWSRELARVEDEIATLRTVLQSKI 324
A+ + AEW +++VED+ A +R VL+ +
Sbjct: 528 AENIAAEWKNRVSKVEDDNAKVRRVLEQSM 557
>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 657
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 277 VEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV 411
V D +A LRT L+S+ + +LK+K ++W I E+V + L +V
Sbjct: 308 VGDTLAILRTELKSQKKHVRNLKKK---SLWSRILEEVMEKLVDV 349
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 190 DIHTPDELAGLTPEQADQLRAEWSRELARVEDEI---ATLRTVLQSKIRQSSDLKR 348
DI TP + Q D + E +++ ++EDEI A + + Q +R SS L R
Sbjct: 159 DIRTPSAPPIMESGQEDSISLEIEKDIQKIEDEICGEAGVESSKQESMRSSSHLYR 214
>At1g02420.1 68414.m00189 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile: PF01535 PPR
repeat
Length = 491
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 143 VFKQLKKQCQAPEWQGTYILLMSWPASHPSRQTSYALNGVAS*PVSKMKSRL*ELYCKAR 322
V+ LK Q Q P+ Q ILL W +S + + G P + L ++YCK R
Sbjct: 202 VYHSLKHQFQ-PDLQTFNILLSGWKSSEEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDR 260
Query: 323 SVK 331
++
Sbjct: 261 EIE 263
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 463 EKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVGS 570
EK S ++G T GVSS++ +FR I VG+
Sbjct: 802 EKPSEVLGDATLGVSSEINLTSRLPNFRPIGTAVGT 837
>At4g26050.1 68417.m03750 leucine-rich repeat family protein
contains Pfam PF00560: Leucine Rich Repeat domains;
Length = 383
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 382 EDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITA-GVSSKLGQMRNSE 537
E V QGL+ +K+ + TES KT +K S IG + G+SS G+ E
Sbjct: 286 EVVEQGLEALKQYMSEKMTESYKKTPTKKKSWGIGKLVKYGLSSSPGRSTGRE 338
>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
Membrane-associated protein Hem (Dhem-2)
(Swiss-Prot:P55162) [Drosophila melanogaster]; weak
similarity to Nck-associated protein 1 (NAP 1)
(p125Nap1) (Membrane-associated protein HEM-2)
(Swiss-Prot:P55161) [Rattus norvegicus]
Length = 1339
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 506 DTPAVMPPMIEDVFSAVVFITDSVFWY 426
D P+++ P I+ VFSA+ V WY
Sbjct: 417 DQPSLLAPNIQMVFSALALAQSEVLWY 443
>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
(RbohE) / NADPH oxidase nearly identical to respiratory
burst oxidase protein E GI:3242787 [gi:3242787] from
[Arabidopsis thaliana]
Length = 926
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 98 HSFHTVRVFHCKI*AVFKQLKKQCQ 172
H TV VF+C I V K+LKKQ Q
Sbjct: 885 HPNSTVGVFYCGIQTVAKELKKQAQ 909
>At1g02330.1 68414.m00178 expressed protein contains similarity to
hepatocellular carcinoma-associated antigen 59
GI:7158847 from [Homo sapiens]
Length = 279
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 253 EWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQ 432
E EL RVEDE+ + L+ K ++SS+ T E+ + LKN++E++ +
Sbjct: 122 EVENELKRVEDELYKIPDHLKVK-KRSSEESSTQWTTGIAEVQLPIEYKLKNIEETEAAK 180
Query: 433 K 435
K
Sbjct: 181 K 181
>At4g10270.1 68417.m01688 wound-responsive family protein similar to
wound induced protein (GI:19320) [Lycopersicon
esculentum]
Length = 90
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +1
Query: 340 LKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSS 477
LK +LG+ W I VNQ L+N S K S +A TSS
Sbjct: 20 LKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSS 65
>At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putative
similar to UDP-glucose glucosyltransferase GI:3928543
from [Arabidopsis thaliana]
Length = 489
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = +1
Query: 319 KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGI 492
+I ++S++ RKLG+ +W+E TE ++ +++ +Y S+ T+E+ G+
Sbjct: 265 EIDKNSEI-RKLGLNLWEEETESLDWLDTKAEKAVIYVNFGSLTVLTSEQILEFAWGL 321
>At1g64170.1 68414.m07269 cation/hydrogen exchanger, putative
(CHX16) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 847
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -3
Query: 355 QVYVLSPSFD-GSCFAVQFSKSRFHLRHGLARDSIQRVTG 239
++ V PS G ++ +F+K L++ L RDS+Q +TG
Sbjct: 71 EIIVSPPSTGLGQSYSFRFNKYPTRLKYELYRDSVQLITG 110
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 366 VERDHRGRQS--GFEKRQRKPSIPKN*ICDKNDRRE-DVFDHRRHHGRRVQQARSDAQLG 536
+ER HR R+ E R+ + DK RRE D DHR H + ++ D + G
Sbjct: 437 LERKHRERKERESREDEDRRRRRRREESRDKESRRERDEDDHRSHRDYKERRRERDDRHG 496
Query: 537 VFPLHRRTRR 566
H R R
Sbjct: 497 REARHERRDR 506
>At1g33970.1 68414.m04212 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 342
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +1
Query: 220 LTPEQADQLRAEW-SRELA-RVEDEIATLRTVLQSKIRQSSDLKRKLG 357
L EQA +L AE + E+ R DEI LR L+ +++ +L++KLG
Sbjct: 290 LGEEQAARLEAEKRANEVQKRSSDEIKKLRENLERAEKETKELQKKLG 337
>At5g46860.1 68418.m05774 syntaxin 22 (SYP22) (VAM3) identical to
GP|8809669| syntaxin related protein AtVam3p
[Arabidopsis thaliana]
Length = 268
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +1
Query: 226 PEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGIT--VWKEITEDVN-Q 396
PEQ QL+ +EL +++EIA V++ + + ++ +++G ++K++ VN Q
Sbjct: 150 PEQRAQLQESKRQELVLLDNEIAFNEAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQ 209
Query: 397 GL 402
G+
Sbjct: 210 GV 211
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 184 AGDIHTPDELAGLTPEQADQL---RAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKL 354
AGD TP+ELA T Q D L R + + EL ++ E+ + + KIR KR
Sbjct: 134 AGD-STPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAF--DKIRLERTNKRHA 190
Query: 355 G 357
G
Sbjct: 191 G 191
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 27.5 bits (58), Expect = 6.8
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 184 AGDIHTPDELAGLTPEQADQL---RAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKL 354
AGD TP+ELA T Q D L R + + EL ++ E+ + + KIR KR
Sbjct: 134 AGD-STPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAF--DKIRLERTNKRHA 190
Query: 355 G 357
G
Sbjct: 191 G 191
>At4g33390.1 68417.m04746 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 779
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 238 DQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKE 417
DQ W +EL + E+E+ L+ L S + +L+ KL + D+ + L + KE
Sbjct: 370 DQETHRWEKELKQAEEELQRLKQHLVS----TKELQVKLEFA--SALLLDLKKELADHKE 423
Query: 418 -SQVYQKTESVIKTTAE 465
S+V ++T + T E
Sbjct: 424 SSKVKEETSETVVTNIE 440
>At3g28320.1 68416.m03538 hypothetical protein similar to At14a
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 280
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 226 PEQADQLRAEWSRELARVEDEIATLRTVLQSKI-RQSSDLKRKLGITVWKEITEDVNQGL 402
PEQ D+L+ + S L V+D I + + K+ +S + K T E+ E V +
Sbjct: 203 PEQVDELKDQISSLLQTVDDAIGSEGDEVDVKLDMESLEDDVKTLTTKITEVCETVAKYS 262
Query: 403 KNVKESQVY 429
K +KE++++
Sbjct: 263 KIIKEARLH 271
>At2g26570.1 68415.m03187 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
weak similarity to merozoite surface protein 3 alpha
(GI:27596802) [Plasmodium vivax]
Length = 807
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 238 DQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKL 354
DQ W +EL + E+E+ L +I S DLK KL
Sbjct: 379 DQDTHRWEKELKQAEEELQR----LNQQIHSSKDLKSKL 413
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 280 EDEIATLRT---VLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVI 450
EDE+ T V+ + SS +K ++ + V E T + +V S +T
Sbjct: 61 EDELEPSHTDSNVVSEVVNVSSGVK-EIDLLVRNESTTSSGFDVSSVSSSDTDDQTLLAR 119
Query: 451 KTTAEKTSSIIGGITAGVSSKLG 519
+ TS++ GG++ SSK G
Sbjct: 120 NDASSSTSTMPGGLSESSSSKSG 142
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 27.1 bits (57), Expect = 9.0
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +1
Query: 280 EDEIATLRT---VLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVI 450
EDE+ T V+ + SS +K ++ + V E T + +V S +T
Sbjct: 61 EDELEPSHTDSNVVSEVVNVSSGVK-EIDLLVRNESTTSSGFDVSSVSSSDTDDQTLLAR 119
Query: 451 KTTAEKTSSIIGGITAGVSSKLG 519
+ TS++ GG++ SSK G
Sbjct: 120 NDASSSTSTMPGGLSESSSSKSG 142
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,283,037
Number of Sequences: 28952
Number of extensions: 210934
Number of successful extensions: 690
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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