Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o21
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   1.8  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    27   3.2  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   4.2  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   5.6  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   5.6  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    25   7.4  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 342 LPDGNSWCPDCVEAEP-VVRHYLSELDKSIIFVYVDVGDREYWK 470
           LP G  WC  C+  +P ++R ++  L    +F+   V   E+WK
Sbjct: 688 LPPG--WCEYCLAHQPFLLRSFIRSL-PDCLFINTQVKHHEHWK 728


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 82  DYHYMYLMIILPNALYRIFINFSIHNLTVGNLYV 183
           DY ++ +  I+P  +Y +F  F IH   V +LY+
Sbjct: 133 DYRWVRVRQIMPKWIYPLFHYFYIHIFQVLHLYL 166


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 85  YHYMYLMIILPNALYRIFINFSIHNLTVGNLYVFK 189
           +H M+ ++I   AL  +F N  IH+       VFK
Sbjct: 493 FHVMHQLVIATTALRSMFTNAEIHDFDGDEEEVFK 527


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 653 NLPLKEXVIFPYLIFFFEQHLQKF 582
           ++P+   V FPYL  F E+H   F
Sbjct: 727 DVPVDNSVDFPYLRLFLEKHADDF 750


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 458 RILEGQRVPVQNGQSL*VDGHTDFNKMEGSTEA*GKPVQQSGTSADVVRRRRLNKEKSPI 637
           ++L  Q +P +  Q + VD  T+    E + +   KPV +    + +    +L  EKSP 
Sbjct: 313 QLLNNQEIPSEQ-QIISVDKATESPVQEVAVDVNEKPVDEIVEPSKLQMENKLPSEKSPT 371

Query: 638 LLR 646
           + R
Sbjct: 372 IDR 374


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 501 RSKLMVIPTLIKWKGVQRLEGSQCSNRELLQMLFEEED 614
           R+K+  + T + WK V++    Q +N    + LFEE D
Sbjct: 75  RAKVNRLKTYLSWKEVRKKAKEQDANPADTKDLFEEVD 112


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 375 VEAEPVVRHYLSELDK-SIIFVYVDVGDREYW 467
           V+  P  RH L+E+DK S +   V  G  +YW
Sbjct: 121 VQVSPEARHKLAEIDKGSHLEANVSGGLLKYW 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,762
Number of Sequences: 5004
Number of extensions: 57367
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)