Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10o21
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0146 - 12274721-12274989,12275090-12275240 60 2e-09
12_02_0346 - 17776871-17781445 31 1.1
11_02_0068 + 7991816-7992603,7995209-7997177 29 2.5
08_02_0648 - 19694538-19696569,19697151-19697998 28 5.8
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987... 28 5.8
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 28 7.6
07_03_1367 + 26072270-26072374,26074047-26074724 28 7.6
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 28 7.6
01_03_0201 + 13758227-13758760,13758784-13759452 28 7.6
>06_02_0146 - 12274721-12274989,12275090-12275240
Length = 139
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Frame = +3
Query: 297 DSRGPPVFFYFSGSKLPDGN-SWCPDCVEAEPVVRHYLSEL----DKSIIFVYVDVGDRE 461
D+ G F + N +WCPDC AEPV+ + +K ++ + VGD+
Sbjct: 26 DAEGKVKLLLFLADRDASSNQTWCPDCNVAEPVIYDRVEAAAKGKEKDVVLLRAYVGDKP 85
Query: 462 YWKDKECPFRTDSRSKLMVIPTLIKWK 542
W+D P+R D R +L +PTLI+W+
Sbjct: 86 TWRDPAHPWRADPRFRLTGVPTLIRWE 112
>12_02_0346 - 17776871-17781445
Length = 1524
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +3
Query: 339 KLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGD--REYWKDKECPFRTDSRSKL 512
K+P GN+ + + E + + S+ + V DV + + WK PFR
Sbjct: 325 KMPKGNNEKENESDQEKIEKRIQSQ---QFLLVLDDVWEYHEDEWKTLLAPFRKSGTKGN 381
Query: 513 MVIPTLIKWKGVQRLEGSQCS 575
MVI T K K + +E + CS
Sbjct: 382 MVIVTTRKQKIAKMVESTDCS 402
>11_02_0068 + 7991816-7992603,7995209-7997177
Length = 918
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 393 VRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLI 533
+R YLS DK I + D+ D + WK EC + R ++ T I
Sbjct: 255 LREYLS--DKRYIVIVDDIWDMQIWKFIECALVKNCRGSRIITTTRI 299
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +3
Query: 417 DKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLIK 536
+KS + DV ++ WKD +C F +++ + +++ T I+
Sbjct: 281 NKSYFVLIDDVWSKQAWKDIQCAFPSNNNASRIMMTTRIQ 320
>07_03_1583 -
27898375-27898436,27898455-27898539,27898621-27898768,
27899009-27899028,27899135-27899236,27899743-27899812,
27899956-27900012,27902324-27902484,27902742-27902761,
27902997-27903069,27903077-27903169,27903456-27903496,
27903597-27903858
Length = 397
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 388 GSASTQSGHQLLPSGSFEPLK*KNTGGPRESIAR 287
GSA+ S LP+ + P+ + TGGPR + R
Sbjct: 14 GSAAAASSSVSLPASTRAPVLHRTTGGPRRRLQR 47
>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
Length = 863
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 79 YDYHYMYLMIILPNALYRIFINFSIHN 159
+DYH M L L L+RI I F +H+
Sbjct: 204 HDYHLMLLPTFLRKKLHRIKIGFFLHS 230
>07_03_1367 + 26072270-26072374,26074047-26074724
Length = 260
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 330 SGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSI 428
S +KL DG W DC + +P+ + +L+K +
Sbjct: 64 SYNKLIDGKMWLEDCNKEDPLDPTQIQDLEKQL 96
>04_04_1592 -
34649484-34649547,34650118-34650186,34650325-34650444,
34650630-34650742,34650824-34650898,34651224-34651346,
34651427-34651446,34652354-34652410,34652922-34653860,
34653961-34654189,34654296-34654439,34654527-34654601,
34655363-34655433,34656103-34656205,34656407-34656633,
34656791-34656908,34657239-34657369,34657709-34657802
Length = 923
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 391 TGSASTQSGHQLLPSGSFEPLK*KNTGGPRESIARV-YFENSSKPFRST 248
TG+++ +GH L S S + +N G R +I R+ +NS +S+
Sbjct: 328 TGTSTKLNGHSELKSSSSSTMPLQNDSGSRANIGRLSVLQNSENNIKSS 376
>01_03_0201 + 13758227-13758760,13758784-13759452
Length = 400
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 262 VLKNFRNILVQLILVVPLYFFTLAVQNYLMAIAGAP 369
+LK F +Q ++PL+FF + +L + G P
Sbjct: 28 LLKEFEEHNLQFTSIIPLFFFYSYISKFLSDLQGQP 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,639
Number of Sequences: 37544
Number of extensions: 319316
Number of successful extensions: 711
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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