Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o21
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024860-1|AAK29986.1|  132|Caenorhabditis elegans Hypothetical ...    89   3e-18
U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical pr...    32   0.32 
Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical p...    31   0.96 
U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z54342-15|CAK55172.1|  465|Caenorhabditis elegans Hypothetical p...    28   6.8  
U80029-11|AAB37590.1|  155|Caenorhabditis elegans Hypothetical p...    28   6.8  
U23511-9|AAC46796.1|  140|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U23511-8|AAU20849.1|  167|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine re...    28   6.8  
U70855-3|AAM98001.1|  327|Caenorhabditis elegans Tyrosinyl trna ...    27   9.0  
U70855-2|AAB09162.2|  447|Caenorhabditis elegans Tyrosinyl trna ...    27   9.0  
AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arr...    27   9.0  

>AC024860-1|AAK29986.1|  132|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.1 protein.
          Length = 132

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 52/124 (41%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
 Frame = +3

Query: 258 KGFEEFSKYTRAIDSRGPPVFFYFSGSK-LPDGNSWCPDCVEAEPVVRHYLSE---LDKS 425
           +G+E F +  ++I  +G  V   F+GSK L  G SWCPDCV AEPVV   + +       
Sbjct: 10  QGYEAFQETLKSI-GKGKRVVALFTGSKILTTGESWCPDCVVAEPVVEEVIKDAAVAGLD 68

Query: 426 IIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLIK-WKGVQRLEGSQCSNRELLQMLF 602
           + FV V VG+RE W+D    FRTD   KL  IPTL++     +RL   Q +N+ L++  F
Sbjct: 69  VHFVTVFVGNREVWRDPAVGFRTDPTLKLTCIPTLLEVGNKAKRLLERQIANKHLVKDFF 128

Query: 603 EEED 614
            EED
Sbjct: 129 TEED 132


>U28412-5|AAC46595.1|  229|Caenorhabditis elegans Hypothetical
           protein T19C3.4 protein.
          Length = 229

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 160 LTVGNLYVFKKYIKIY*TNQVLHFPKWLLTWI*KVLKNFRNILVQLILV--VPLYF 321
           +T G LY   +  K   T     + KW++ WI   + +F   L+ L+L    P YF
Sbjct: 11  ITAGTLYPAYRSYKAVRTKDTREYVKWMMYWIVFAIYSFLENLLDLVLAFWFPFYF 66


>Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical
           protein C25A1.3 protein.
          Length = 380

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 363 CPDCVEAEPVVRHYLSELDKSIIFVY 440
           CP+ +   P+V+H L ELD  ++FV+
Sbjct: 228 CPEFLAYFPLVKHLLEELDMELLFVH 253


>U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.5 protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 261 GFEEFSKYTRAIDSRGPPVFFYFSGSKLPDGNSWCPDCVEAE 386
           G  +  K     +S G PV FY  G K PD      +CVE +
Sbjct: 245 GVNDIQKENVFRNSDGTPVDFYKWGKKQPDNQEHNENCVEVD 286


>AC006633-1|AAK68374.1|  113|Caenorhabditis elegans Hypothetical
           protein F35B3.3 protein.
          Length = 113

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 456 REYWKDKECPFRTDSRSKLMVIPTLIKWKGVQRLEGSQCSNR 581
           R+ +K K  P  TD  S    I     W  +QR+  S C NR
Sbjct: 56  RDVFKKKSSPCETDVNSNAEHIGGESIWGKIQRMSVSNCQNR 97


>Z54342-15|CAK55172.1|  465|Caenorhabditis elegans Hypothetical
           protein C08H9.4b protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/101 (18%), Positives = 42/101 (41%)
 Frame = +3

Query: 198 KNLLN*SSTALPKMVINVDLKGFEEFSKYTRAIDSRGPPVFFYFSGSKLPDGNSWCPDCV 377
           +N LN     +  +V + +L       ++  ++D  G  +F  +S    PD   +     
Sbjct: 253 QNKLNRKEDFVISLVASSNLNLLFNLVEFLNSVDFFGIYLFNSYSYQVGPDSPLYGGGSR 312

Query: 378 EAEPVVRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDS 500
             + ++++Y+ +  +   F  +      YW+  + P R DS
Sbjct: 313 NVDEIMKYYICKTGQPSKFNIIISFHATYWEGTDLPLRDDS 353


>U80029-11|AAB37590.1|  155|Caenorhabditis elegans Hypothetical
           protein T20D4.7 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 306 GPPVFFYFSGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFVYV 443
           G  V FYFS         WCP C    P+++ +  E+++    V+V
Sbjct: 39  GKLVGFYFSAH-------WCPPCRGFTPILKDFYEEVNEEFEIVFV 77


>U23511-9|AAC46796.1|  140|Caenorhabditis elegans Hypothetical
           protein C32D5.8a protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 306 GPPVFFYFSGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFVYV 443
           G  V FYFS         WCP C    P+++ +  E++     V+V
Sbjct: 25  GKAVGFYFSAH-------WCPPCRGFTPILKDFYEEVEDEFEVVFV 63


>U23511-8|AAU20849.1|  167|Caenorhabditis elegans Hypothetical
           protein C32D5.8b protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 306 GPPVFFYFSGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFVYV 443
           G  V FYFS         WCP C    P+++ +  E++     V+V
Sbjct: 52  GKAVGFYFSAH-------WCPPCRGFTPILKDFYEEVEDEFEVVFV 90


>AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein29 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 360 WCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREY 464
           WC  C+ A  +V + L +L KS +   +  G+R Y
Sbjct: 119 WCCSCIIAMILVMNRLLDLSKSTLSTLIFEGNRTY 153


>U70855-3|AAM98001.1|  327|Caenorhabditis elegans Tyrosinyl trna
           synthetase protein1, isoform b protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 367 GHQLLPSGSFEPLK*KNTGGPRESIARVYFENSS 266
           GH L+  G+F  +  +    P ESIA V+ EN+S
Sbjct: 277 GHLLMQQGAFS-VNGEKKRSPSESIADVFLENAS 309


>U70855-2|AAB09162.2|  447|Caenorhabditis elegans Tyrosinyl trna
           synthetase protein1, isoform a protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 367 GHQLLPSGSFEPLK*KNTGGPRESIARVYFENSS 266
           GH L+  G+F  +  +    P ESIA V+ EN+S
Sbjct: 397 GHLLMQQGAFS-VNGEKKRSPSESIADVFLENAS 429


>AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arrest
           at two-fold protein6 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 307 VPLYFFTLAVQNYLMAIAGAPTAWKLNQSSGI 402
           VPLY F L VQ++   +     A+KL + +G+
Sbjct: 312 VPLYHFNLQVQSHEEKVKNVQFAFKLMEDTGL 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,611,907
Number of Sequences: 27780
Number of extensions: 312961
Number of successful extensions: 746
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)