Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o20
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   4.8  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    25   8.5  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   8.5  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 196  LKAQHHIVCVICRE 155
            LKA+ H +C+ICR+
Sbjct: 1084 LKAESHQICIICRD 1097


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 435 CKITNE*ELKFSINSCCFTETQLP 364
           C I NE E+K+    C F    LP
Sbjct: 4   CSICNESEIKYKCPKCSFPYCSLP 27


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 2   YCEFHRMYKNKEFRK 46
           YC + ++ KNK+FRK
Sbjct: 86  YCYYKKILKNKDFRK 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,973
Number of Sequences: 5004
Number of extensions: 34710
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)