Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o20
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25162| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)             27   8.8  

>SB_25162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/30 (60%), Positives = 24/30 (80%)
 Frame = +2

Query: 2   YCEFHRMYKNKEFRKAAQLLISLITSKIAP 91
           Y EFHRMY   +FR AA LL+SL+TS+++P
Sbjct: 310 YREFHRMYAEADFRGAATLLVSLLTSRLSP 339


>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 249  YLGTWHGLH*PRNLKKVLSDKVLCVL 326
            Y+    G+H P ++K+VL+D V C+L
Sbjct: 970  YIHVAQGVHLPSHVKEVLTDGVFCLL 995


>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
          Length = 1480

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 377 SVKQQELIENLSSHSFVILHHNFNRFYE 460
           SVK ++LI NL++ +  ++HH   + YE
Sbjct: 861 SVKVEKLIPNLNNKTKYVVHHETLKLYE 888


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,831
Number of Sequences: 59808
Number of extensions: 251625
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)