Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o20
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.57 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   7.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   9.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   9.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   9.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   9.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 190 P*ATSPELQPRESGTPQIGFT 252
           P + S    PRE GTP+I FT
Sbjct: 130 PPSVSLSSPPREPGTPRINFT 150


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 411 VLIHLLSYTITLT 449
           +L+H+L+ TITLT
Sbjct: 128 LLLHMLTTTITLT 140


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 320 CVE*CVYCRLMLIN 361
           C+E C++ RL L+N
Sbjct: 55  CIEACLFHRLALMN 68


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 100 EKIRGYFRCDERYEELCGFSE 38
           ++ R Y + D +YE+LC   E
Sbjct: 7   DRNREYRKKDRQYEKLCNEEE 27


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 100 EKIRGYFRCDERYEELCGFSE 38
           ++ R Y + D +YE+LC   E
Sbjct: 7   DRNREYRKKDRQYEKLCNEEE 27


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 100 EKIRGYFRCDERYEELCGFSE 38
           ++ R Y + D +YE+LC   E
Sbjct: 7   DRNREYRKKDRQYEKLCNEEE 27


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 100 EKIRGYFRCDERYEELCGFSE 38
           ++ R Y + D +YE+LC   E
Sbjct: 7   DRNREYRKKDRQYEKLCNEEE 27


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 291 KKVLSDKVLCVLSDAS 338
           KK +SD V+C LS ++
Sbjct: 217 KKAMSDLVICKLSHSN 232


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 291 KKVLSDKVLCVLSDAS 338
           KK +SD V+C LS ++
Sbjct: 217 KKAMSDLVICKLSHSN 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,061
Number of Sequences: 438
Number of extensions: 2746
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)