Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o18
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    26   0.17 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    26   0.17 
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    25   0.40 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    25   0.40 
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   2.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   3.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   4.9  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   4.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.6  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 389 PVGKPAPPLPRRPDVFISLTIQSVPFSKISFVKYQSPRAR 270
           P G+P P +PR P  ++S+T    PF ++       PR R
Sbjct: 122 PGGQPIPDIPRYP--WMSITDWMSPFDRVVCGPNGCPRRR 159


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 389 PVGKPAPPLPRRPDVFISLTIQSVPFSKISFVKYQSPRAR 270
           P G+P P +PR P  ++S+T    PF ++       PR R
Sbjct: 181 PGGQPIPDIPRYP--WMSITDWMSPFDRVVCGPNGCPRRR 218


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 389 PVGKPAPPLPRRPDVFISLTIQSVPFSKI 303
           P G+P P +PR P  ++S+T    PF ++
Sbjct: 122 PGGQPIPDIPRYP--WMSITDWMSPFDRV 148


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 389 PVGKPAPPLPRRPDVFISLTIQSVPFSKI 303
           P G+P P +PR P  ++S+T    PF ++
Sbjct: 181 PGGQPIPDIPRYP--WMSITDWMSPFDRV 207


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 67  MAGALTRVIQGTKPHL 114
           M GA++  IQG+KP++
Sbjct: 71  MQGAISNHIQGSKPNI 86


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 183 RRLGLLEAHRYIVDINCQRPNNAQMWFCALNHS 85
           + L L E +++I+D+      N Q W  ++ HS
Sbjct: 159 KMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHS 191


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 461 PSSAFTTRYFGRPSDG 414
           P+  + TRY  RPS G
Sbjct: 191 PAWVYCTRYSDRPSSG 206


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 146 TMYRCASSRPRRLQKTSMDRW 208
           TM RC  SRP R    ++ R+
Sbjct: 253 TMIRCLKSRPARQIALTVPRY 273


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 118 IIGPLAINVNNVPVRFQQTQAPSKDKYG 201
           + G   +NV+++P+ F+     S  +YG
Sbjct: 570 LFGGFFLNVSSIPIYFKWLSFLSWFRYG 597


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 118 IIGPLAINVNNVPVRFQQTQAPSKDKYG 201
           + G   +NV+++P+ F+     S  +YG
Sbjct: 570 LFGGFFLNVSSIPIYFKWLSFLSWFRYG 597


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,630
Number of Sequences: 336
Number of extensions: 3302
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)