Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10o18
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 60 1e-10
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 31 0.14
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 27 1.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.2
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.2
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 27 2.2
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 26 2.9
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 26 2.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 6.7
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 60.5 bits (140), Expect = 1e-10
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Frame = +1
Query: 220 RVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKW 399
R+F NL + R+ ALA G++ EIL I+ ++ S LRGRG GFPTG K
Sbjct: 33 RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92
Query: 400 SFMNKPSD---GRPK--YLVVNADXGEPGTCKDREIMRXDPHKL 516
+ K + GR + ++VNA + G+ KDR ++R +PHK+
Sbjct: 93 LSLYKATSSERGRKEKPVVIVNAAENDIGSFKDRLLLRHEPHKI 136
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 509 WGSXRIISLSLQVPGSPSSAFTTRYFGRPSDGLFMNDHFIPV 384
W + SL P FTTR+F RPS G + F+ V
Sbjct: 257 WKAPESWGTSLPTEAIPKQVFTTRFFARPSLGNRKKEFFLRV 298
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 156 RYIVDINCQRPNNAQMWFCALN 91
R +VD++C+R +N WF A+N
Sbjct: 133 RLVVDVSCRRKDN--RWFAAIN 152
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 377 PAPPLPRRPDVFISLTIQSVP 315
PAP P +P++FIS +QS P
Sbjct: 255 PAPLEPDKPELFISYIVQSHP 275
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 291 IPVPSGESTLQPPFMSTIQ 235
+P P+ TL PP +ST+Q
Sbjct: 1181 VPAPAAPQTLNPPSVSTVQ 1199
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -2
Query: 485 LSLQVPGSPSSAFTTRY-FGRPSDGLFMNDHFIPVGKPAPPLPRRPDV 345
L + +PGS + T ++ P G++ F P+ APP+P P+V
Sbjct: 274 LRVSIPGSQPALVTPKHKMNVPPMGMYPLP-FSPLPSAAPPIPFSPNV 320
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 120 YWAFGN*CQQCTGALPADPGAFKRQVWT 203
YW+ G C +C P G+ ++ WT
Sbjct: 380 YWSLGCICYECLVGYPPFSGSTLQETWT 407
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 2.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 132 QRPNNAQMWFCALNHSCQCTSHIS 61
+ PNNA++W A +H +++S
Sbjct: 136 KHPNNAELWVVACDHEFSINANVS 159
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 73 QPYFLLKKFHTDFAFSQIKFNDNI 2
Q + LL FH+ F F +F+DN+
Sbjct: 523 QVFDLLNFFHSTFLFQNYEFSDNV 546
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 374 APPLPRRPDVFISLTIQSVPFSKISFVKYQSPRARAPFNLHSCRP 240
A P+PRRP +F + S S++ SP A+ +H P
Sbjct: 96 AQPVPRRPSLFDRPNLVSRSSSRLGDSPSLSPVAQVANPIHHTAP 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,082
Number of Sequences: 5004
Number of extensions: 53007
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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