Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o18
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40801| Best HMM Match : Complex1_51K (HMM E-Value=0)               161   4e-40
SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)              30   1.3  
SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)              30   1.3  
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)                 29   3.0  
SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)                     27   6.9  
SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)                27   6.9  
SB_34752| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)                   27   9.2  
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)                        27   9.2  

>SB_40801| Best HMM Match : Complex1_51K (HMM E-Value=0)
          Length = 369

 Score =  161 bits (390), Expect = 4e-40
 Identities = 69/79 (87%), Positives = 72/79 (91%)
 Frame = +1

Query: 280 GDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADX 459
           GDWY TKEI+LKG DWI+ E+ TSGLRGRGGAGFPTGMKW FMNKPSDGRPKYLVVNAD 
Sbjct: 1   GDWYKTKEIILKGPDWILKEITTSGLRGRGGAGFPTGMKWGFMNKPSDGRPKYLVVNADE 60

Query: 460 GEPGTCKDREIMRXDPHKL 516
           GEPGTCKDREIMR DPHKL
Sbjct: 61  GEPGTCKDREIMRNDPHKL 79


>SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
          Length = 160

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 61  RNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVR 162
           R MA ++  +++  + H G+IG + +N    P+R
Sbjct: 62  RPMASSVENILKRIQSHKGVIGSIVVNSEGTPIR 95


>SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
          Length = 101

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 61  RNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVR 162
           R MA ++  +++  + H G+IG + +N    P+R
Sbjct: 3   RPMASSVENILKRIQSHKGVIGSIVVNSEGTPIR 36


>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
          Length = 200

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 467 GSPSSAFTTRYFGRPSDGLFMNDHFIPVGKPAPPLPRRPDVFISLTI 327
           G P++ F  RY  + +  +F     +    P P LP  PD +  +TI
Sbjct: 18  GGPAAIFVCRYRVQHNKTVFKTQVILTGWNPVPWLPEPPDFYRPVTI 64


>SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 568

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 112 LGIIGPLAINVNNVPVRFQQTQAPSKDKYGPL 207
           L ++G   +N+NN+ +++  T     DK+ PL
Sbjct: 162 LSMMGMSYVNINNLVIKYDNTLKALLDKHAPL 193


>SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)
          Length = 493

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 398 HFIPVGKPAPPLPRRPDVFISLTIQSVPFSKIS 300
           HF  + + A PL   P+ F+ L +  + FS++S
Sbjct: 444 HFKRISRKANPLFSYPEFFVFLCVSEMRFSRVS 476


>SB_34752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = -2

Query: 491 ISLSLQVPGSPSSAFTTRYFGRPSDGLFMNDHFIPVGKPAPPLPRRPDVFISLTIQSVPF 312
           +S  L+VP S +   + R  G  S    M +HFIPV KP+  +     +F      +   
Sbjct: 189 LSFQLEVPRSYTKELS-RPDGYKSPTREMIEHFIPVRKPSLTVESLVKLFNEKNAPTALV 247

Query: 311 SKISFVKYQSPRARAP 264
            K+  +K   P    P
Sbjct: 248 KKLENLKQDLPIKHLP 263


>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1318

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -2

Query: 383 GKPAPPLPRRPDVFISLTI-----QSVPFSKISFVKYQSPRARAP 264
           G  + PLPRRP V +S  +     +SVP S  S     SP    P
Sbjct: 32  GSSSEPLPRRPPVPVSYELPASYQRSVPVSTSSSTPVSSPSNSTP 76


>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
          Length = 1590

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 380 KPAPPLPRRPDVFISLTIQSVPFSKISFVKYQSPRARAPFNL-HSCRPYKFVKTRS 216
           KPAP  PR+P + ++ + + VP   ++   ++      P  L   C P    K ++
Sbjct: 519 KPAPTTPRQPPMPLASSTKDVPNLPLNMTSHRETTPPRPSELPFPCTPANNTKMKA 574


>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
          Length = 165

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 381 KTCSSPASKARCFHFINDPVG 319
           K C + +SK +CF+  +DP G
Sbjct: 144 KNCRATSSKTKCFNHSSDPCG 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,377,868
Number of Sequences: 59808
Number of extensions: 429694
Number of successful extensions: 1399
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)