Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o18
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   3.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   3.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   10.0 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   10.0 

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 82  SVHQPYFLLKKFHTDFAFSQ 23
           ++H P F L+KF TD+  S+
Sbjct: 203 NLHLPRFTLEKFFTDYCNSK 222


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 82  SVHQPYFLLKKFHTDFAFSQ 23
           ++H P F L+KF TD+  S+
Sbjct: 203 NLHLPRFTLEKFFTDYCNSK 222


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 43  CETFSARNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGP 204
           C  F  R M   ++  IQ   P    IGPL      +P    + + P   ++GP
Sbjct: 124 CGNFPPRPMGPWIS--IQEQIPRFRHIGPLTPFPRFIPPNAYRFRPPLNPRFGP 175


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 43  CETFSARNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGP 204
           C  F  R M   ++  IQ   P    IGPL      +P    + + P   ++GP
Sbjct: 365 CGNFPPRPMGPWIS--IQEQIPRFRHIGPLTPFPRFIPPNAYRFRPPLNPRFGP 416


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +1

Query: 91  IQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGP 204
           IQ   P    IGP  +    +P    + + P   ++GP
Sbjct: 134 IQEQIPRFRHIGPSTLFPRFIPPNAYRLRPPLNPRFGP 171


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 452 AFTTRYFGRPSDGLFMNDHFIPVGKP 375
           A +T   G         D+F+P+G+P
Sbjct: 403 AVSTSILGDKKTAEENTDYFMPIGRP 428


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,205
Number of Sequences: 438
Number of extensions: 3602
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)