Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o14
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    27   2.1  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    27   2.8  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.5  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 397 EVRVLPNEFPCDCQRTLTRPRVECQTQSVIPFEQYPVNEFY 519
           E+RV P E PC        P+   +  + I FE +    FY
Sbjct: 93  ELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFY 133


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 304 REREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPN 417
           R+R++   S++V  ND  I + +  IAR+P E  V+ N
Sbjct: 58  RDRKLSRTSTLV-GNDTLIEVGSRSIARSPFERNVISN 94


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 598 GR*GFPRWLPLGVHLGVTCNSR 533
           GR G P+ + LG  +G+ CN R
Sbjct: 567 GRNGLPQGMWLGAAIGLACNMR 588


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 418 EFPCDCQRTLTRPRVECQT 474
           E PC C RT   P V C T
Sbjct: 619 ELPCTCGRTRLYPPVACGT 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,685
Number of Sequences: 5004
Number of extensions: 56794
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)