Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10o14
(599 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38322| Best HMM Match : Neuroparsin (HMM E-Value=2) 40 0.001
SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2) 31 0.71
SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_35080| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 30 1.2
SB_43232| Best HMM Match : Morbilli_P (HMM E-Value=4.2) 29 2.2
SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_16206| Best HMM Match : Planc_extracel (HMM E-Value=10) 28 5.0
SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_38322| Best HMM Match : Neuroparsin (HMM E-Value=2)
Length = 317
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/84 (32%), Positives = 42/84 (50%)
Frame = +1
Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
V VPS + VP + P+S VP+ CP+ + I + P+ V V P+ CQ
Sbjct: 176 VTVPSIQCPVSVTVPSIQ--CPVSVTVPSIQCPVSVTVPSI-QCPVSVTV-PS---IQCQ 228
Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
++T P ++CQ +PF Q V+
Sbjct: 229 VSVTVPSIQCQVSVTVPFIQCQVS 252
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/84 (30%), Positives = 41/84 (48%)
Frame = +1
Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
V VPS + VP + P+S VP+ CP+ + I + P+ V V P+ CQ
Sbjct: 99 VTVPSIQCQVSVTVPSIQ--CPVSVTVPSIQCPVSVTVPSI-QCPVSVTV-PS---IQCQ 151
Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
++T P ++C +P Q PV+
Sbjct: 152 VSVTVPSIQCPVSVTVPSIQCPVS 175
Score = 34.7 bits (76), Expect = 0.058
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = +1
Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
V VPS + VP + +S VP+ CP+ + I + P+ V V P+ C
Sbjct: 88 VTVPSIQCPVSVTVPSIQ--CQVSVTVPSIQCPVSVTVPSI-QCPVSVTV-PS---IQCP 140
Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
++T P ++CQ +P Q PV+
Sbjct: 141 VSVTVPSIQCQVSVTVPSIQCPVS 164
Score = 33.1 bits (72), Expect = 0.18
Identities = 25/84 (29%), Positives = 39/84 (46%)
Frame = +1
Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
V VPS + VP + +S VP CP+ + I + P+ V V P+ CQ
Sbjct: 55 VTVPSIQCQVSVTVPFIQ--CQVSVTVPFIQCPVSVTVPSI-QCPVSVTV-PS---IQCQ 107
Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
++T P ++C +P Q PV+
Sbjct: 108 VSVTVPSIQCPVSVTVPSIQCPVS 131
Score = 32.3 bits (70), Expect = 0.31
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
V VPS + VP + P+S VP+ CP+ + I + + V V P+ C
Sbjct: 110 VTVPSIQCPVSVTVPSIQ--CPVSVTVPSIQCPVSVTVPSI-QCQVSVTV-PS---IQCP 162
Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
++T P ++C +P Q PV+
Sbjct: 163 VSVTVPSIQCPVSVTVPSIQCPVS 186
Score = 32.3 bits (70), Expect = 0.31
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +1
Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
V VPS + VP + P+S VP+ C + + I + P+ V V P+ C
Sbjct: 121 VTVPSIQCPVSVTVPSIQ--CPVSVTVPSIQCQVSVTVPSI-QCPVSVTV-PS---IQCP 173
Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
++T P ++C +P Q PV+
Sbjct: 174 VSVTVPSIQCPVSVTVPSIQCPVS 197
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Frame = +1
Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEI-----ARAP-IEVRVLPNE 420
V VPS + VP + P+S VP+ C + + I P I+ +V
Sbjct: 198 VTVPSIQCPVSVTVPSIQ--CPVSVTVPSIQCQVSVTVPSIQCQVSVTVPFIQCQVSVTV 255
Query: 421 FPCDCQRTLTRPRVECQTQSVIPFEQYPVN 510
CQ ++T P ++CQ +PF Q V+
Sbjct: 256 PFIQCQVSVTVPSIQCQVSVTVPFIQCQVS 285
Score = 27.9 bits (59), Expect = 6.6
Identities = 24/84 (28%), Positives = 38/84 (45%)
Frame = +1
Query: 259 VIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPCDCQ 438
V VPS + VP + +S VP C + + I + + V V P+ CQ
Sbjct: 220 VTVPSIQCQVSVTVPSIQ--CQVSVTVPFIQCQVSVTVPFI-QCQVSVTV-PS---IQCQ 272
Query: 439 RTLTRPRVECQTQSVIPFEQYPVN 510
++T P ++CQ +P Q PV+
Sbjct: 273 VSVTVPFIQCQVSVTVPSIQCPVD 296
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 433 CQRTLTRPRVECQTQSVIPFEQYPVN 510
CQ ++T P ++CQ +PF Q V+
Sbjct: 51 CQVSVTVPSIQCQVSVTVPFIQCQVS 76
>SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2)
Length = 638
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 249 LNHFRGKHRSARILCGRFNSLYCH 178
L+HF+G R A I G FN L CH
Sbjct: 551 LHHFQGLKRQAAIALGFFNRLICH 574
>SB_59743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1220
Score = 31.1 bits (67), Expect = 0.71
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Frame = -1
Query: 461 TRGRVKVR*QSHGNSFGSTRTSIGARAISFASILMGQSLAGTIL-DNGTISRSLGTAIGS 285
TRG++ R + G T+ + +L+ G ++ D+G R +G +
Sbjct: 784 TRGKILERFDKKLATTGCTKKDLFEMEKKLEIMLVAVDALGNVMWDSGKYERGVGQHLEQ 843
Query: 284 NIFWLGTITRLDLIISGANIVLPVSSAADLIACIAIGAFDGVK 156
N W+ T+ DL+ SG L +++A +++ ++G D +K
Sbjct: 844 NEGWITTLELKDLLDSGD---LVMAAAREVL--YSVGKKDSIK 881
>SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 31.1 bits (67), Expect = 0.71
Identities = 25/82 (30%), Positives = 34/82 (41%)
Frame = +3
Query: 105 VVCPMSRYSSSLIIEANFDAIESTNGNTSY*ICRRGYGQNDVCPGND*VETGYCAKPEYV 284
++ PM Y SL I A FD T GN+S + RG P D + + C +P V
Sbjct: 541 LLTPMRSYHYSLRIIAGFDNTVVTMGNSSGNVLDRGGFTEQRVPPGDGLSSVLCKQPCLV 600
Query: 285 XXXXXXXXXXXXPIIQYRAGQR 350
PI +R G+R
Sbjct: 601 --VKYTIYDSCYPISSHRIGKR 620
>SB_35080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 249 LNHFRGKHRSARILCGRFNSLYCH 178
L+HF+G R A I G FN L CH
Sbjct: 5 LHHFQGLKRQAAIALGFFNRLICH 28
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +1
Query: 250 SRRVIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPC 429
S+ + VP++ + +PI VP E+ P++ + PI + ++++ PI V P
Sbjct: 1677 SQPITVPNEQVSQPITVPDEQVSQPITVLDEQILQPITVPDEQVSQ-PITVPDEQVSQPI 1735
Query: 430 DCQRTLTRPRVECQTQSVIPF--EQYPVNE 513
Q ++ Q + PF ++YP+ E
Sbjct: 1736 TVQNKKDSQQIAVQDERTEPFTRQKYPLFE 1765
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 226 MFAPEMIKSRRVIVPSQNMFEPIAVPREREIVPLSSIVPANDCPIRILANEIARAPIEVR 405
MF E + S+ + V + +PIAVP E+ P++ + PI ++ ++++ PI V+
Sbjct: 1400 MFLYEQV-SQLIAVQDKQHSQPIAVPDEQVSQPIAVLDEQASQPIAVVDEQVSQ-PIAVQ 1457
>SB_43232| Best HMM Match : Morbilli_P (HMM E-Value=4.2)
Length = 362
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = -1
Query: 410 STRTSIGARAISFASILMGQSLAGTILDNG---TISRSL-GTAIGSN 282
S T IG S ++L G++LAGT D+G T+ ++L GT+I S+
Sbjct: 219 SDNTLIGTSRDSEITVLSGETLAGTSRDSGITVTLDKTLAGTSIDSD 265
>SB_10801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 910
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = -1
Query: 398 SIGARAISFASILMGQSLAGTIL----DNGTISRSLGTAIGSNIFWLGTITRLDLIISGA 231
SIGA A FAS+L A +L +G I L S L ++ + +I +
Sbjct: 311 SIGATAAIFASLLASYYAASRLLYSLSYDGLICMFLNKINKSRQVPLNSVIAVGVITGLS 370
Query: 230 NIVLPVSSAADLIACIAIGAFDGVKICL 147
++V + +L+A I + V +C+
Sbjct: 371 SLVFNMRELVELVAVATICTYTSVSVCV 398
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +1
Query: 94 SSQQSYAQCPDTALASLLRQILTPSKAPMAIQAIKSAAEDTGRTMFAPEMIKSRRVIV-P 270
S+ ++ A+ PDT +A + L +KAP A +S T APE + V P
Sbjct: 5043 SAMETTAEAPDTTMAPVSTVALETTKAPETTVAPESTM--APETTVAPETTMAPETTVSP 5100
Query: 271 SQNMFEPIAVPREREIVPLSSIVP 342
M V E P +++ P
Sbjct: 5101 ETTMAPGTTVASETTEAPGTTVAP 5124
>SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = +1
Query: 40 LQTMGRIRVIFVCVSIILSSQQSYAQCPDTALASLLRQILTPSKAPMAIQAIKSAAEDTG 219
L+ R R+++ V + Q A+ D A ++ + + P+K+ ++ AE TG
Sbjct: 14 LRISTRARLLYGKVKSFVEDQVIPAE-KDKARSAGMWNLFLPAKSGLSQLEYALIAEQTG 72
Query: 220 RTMFAPEM 243
R+++APE+
Sbjct: 73 RSLYAPEV 80
>SB_16206| Best HMM Match : Planc_extracel (HMM E-Value=10)
Length = 219
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 340 PANDCPIRILANEIARAPIEVRVLPNEFPCDCQRTLTR--PRVECQTQSVI 486
P CP I E +R LP + CDC RT + P ++ +T V+
Sbjct: 163 PYGYCPRAIRLTEPLPPRSMLRALPRHYDCDCIRTRSAMLPPIDGRTSPVL 213
>SB_9274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1230
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -1
Query: 209 SAADLIACIAIGAFDGVKICLNNEARAVSGHW 114
S D C+ +DG+ C N +GHW
Sbjct: 750 SGTDTCKCVPRKIYDGLSRCEGNNVYLKTGHW 781
>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +2
Query: 371 QTK*HVRQSKCAYYQMSFRVIVNEL*HDLEWNVKL-NQSYLLSNIPLTSSTEALRS*ITC 547
QTK H + + YY RV ++ L + ++ ++ Y+L +I +S T LR IT
Sbjct: 251 QTKTHFYEEQIDYYNQYIRVCLDNLSKKGKLELRFESELYILFSILFSSHTPLLRVAIT- 309
Query: 548 HPQMYPERQPAGEPL 592
R+P+G L
Sbjct: 310 -NASVSTRKPSGRGL 323
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,890,117
Number of Sequences: 59808
Number of extensions: 445328
Number of successful extensions: 1299
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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