Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o14
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   4.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   7.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 41  SKQWEELESSLFASQSSYH-HNSRMPNVQIQL*PH 142
           S+ W  +    F+++   H HN  MPNV I++ P+
Sbjct: 113 SRVW--MPDLFFSNEKEGHFHNIIMPNVYIRIFPN 145


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 41  SKQWEELESSLFASQSSYH-HNSRMPNVQIQL*PH 142
           S+ W  +    F+++   H HN  MPNV I++ P+
Sbjct: 113 SRVW--MPDLFFSNEKEGHFHNIIMPNVYIRIFPN 145


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 463 ECQTQSVIPFEQYP 504
           ECQ   VI F QYP
Sbjct: 28  ECQATPVIHFLQYP 41


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 389 ARAISFASILMGQSLAGTILDNGTISRSLGTA 294
           ARA+ F S L G++L+  I      +   GT+
Sbjct: 450 ARAVKFTSKLFGRALSRRIKATVLFATETGTS 481


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 33  NRSPNNGKN*SHLCLRLNHLIITTVVCPM 119
           N S  N  N   LC  +NH+    V  P+
Sbjct: 90  NYSNYNNNNYKQLCYNINHIEQIPVPVPV 118


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 140 EARAVSGHWAYDCCDDKMIETQTKMTL 60
           E  AV     Y CCD+  ++    +T+
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITM 240


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 140 EARAVSGHWAYDCCDDKMIETQTKMTL 60
           E  AV     Y CCD+  ++    +T+
Sbjct: 214 EVPAVRNEKFYTCCDEPYLDITFNITM 240


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 140 EARAVSGHWAYDCCDDKMIETQTKMTL 60
           E  AV     Y CCD+  ++    +T+
Sbjct: 210 EVPAVRNEKFYTCCDEPYLDITFNITM 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,573
Number of Sequences: 438
Number of extensions: 3888
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)