Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o14
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protei...    29   1.8  
At4g12080.1 68417.m01920 DNA-binding family protein contains a A...    29   2.4  
At2g29330.1 68415.m03562 tropinone reductase, putative / tropine...    29   2.4  
At5g51340.1 68418.m06366 expressed protein                             29   3.1  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    28   5.4  
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ...    27   7.2  
At1g68940.1 68414.m07891 armadillo/beta-catenin repeat protein-r...    27   9.5  

>At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protein
           contains Pfam profiles: PF01411 tRNA synthetases class
           II (A), PF02272 DHHA1 domain
          Length = 978

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 304 REREIVPLSSIVPANDCPIRILANEIARAPIEVRVLPNEFPC 429
           R  +++P SS+VP +   +  +A  +   PI +  +P E PC
Sbjct: 94  RGHKVLPSSSLVPEDPTVLLTIAGMLQFKPIFLGKVPREVPC 135


>At4g12080.1 68417.m01920 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 356

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = -1

Query: 422 NSFGSTRTSIGARAISFASI---LMGQSLAGTILDNGTISRSLGTAIGSNIFW--LGTIT 258
           N  G TR+  G  ++S AS    ++G  LAG ++    +   +G+ +             
Sbjct: 240 NDSGGTRSRTGGMSVSLASPDGRVVGGGLAGLLVAASPVQVVVGSFLAGTDHQDQKPKKN 299

Query: 257 RLDLIISGANIVLPVSSAAD 198
           + D ++S     +P+SSAAD
Sbjct: 300 KHDFMLSSPTAAIPISSAAD 319


>At2g29330.1 68415.m03562 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 260

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 239 SGANIVLPVSSAADLIACIAIGAFDGVKICLNNEARAVSGHWAYD 105
           SG  I+  +SSAA +++  A   +   K  LN  AR ++  WA D
Sbjct: 136 SGNGIITFISSAAGIVSFDAASIYGLTKGALNQLARNLACEWAKD 180


>At5g51340.1 68418.m06366 expressed protein 
          Length = 726

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 44  KQWEELESSLFASQSSYHHNSRMPNVQIQL 133
           K+W+EL+S L  ++ S HH   +   +I+L
Sbjct: 640 KKWDELQSRLAEARGSIHHIELVAKARIEL 669


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
 Frame = +1

Query: 82  SIILSSQQSYAQCP-DTALASLLRQILTPSKAPMAIQAIKSAAEDTGRT-MFAPEMIKSR 255
           S + SS++S ++ P   +  SL R     S+  ++   I+S  +   R+ + +     SR
Sbjct: 526 SPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKSVSR 585

Query: 256 RVIVPSQNMFEPIAVPREREIVPLSSIVPA----NDCPIRILANEIARAPIEVRVLPNEF 423
             +  S+       V   R+ V  S I  +    +  PIR+    I+R+P+  R   +  
Sbjct: 586 SPVRSSRRRISRSPVRSSRKSVSRSPIRLSRRSISRSPIRLSRRSISRSPVRGRRRISRS 645

Query: 424 PCDCQRTLTRPR 459
           P   +R   RPR
Sbjct: 646 PVPARRRSVRPR 657


>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
           protein
          Length = 313

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = +1

Query: 82  SIILSSQQSYAQCPDTALASLLRQILTPSKAPMAIQAIKSAAEDTGRTMFAPEMIKSRRV 261
           S+I+S    Y   P+ ALASL  +    +K+P A  ++   AED   +M A   I  +  
Sbjct: 70  SVIVSMAPDYQLSPE-ALASL--EPKDSNKSPKAGDSVLRKAEDVVSSMLAKGFILGKDA 126

Query: 262 IVPSQNMFE 288
           I  ++++ E
Sbjct: 127 IAKAKSVDE 135


>At1g68940.1 68414.m07891 armadillo/beta-catenin repeat
           protein-related / U-box domain-containing protein ;
           contains Pfam profile PF04564: U-box domain
          Length = 1033

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 121 PDTALASLLRQILTPSKAPMAIQAIKSAAEDTGRTMFAPEMIKS 252
           PD     L+R +L+ SK+P A+  I S  ++T  +    E+I +
Sbjct: 643 PDDLNIDLIRILLSLSKSPRAMATIVSVIKETDASFAMIELINN 686


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,635
Number of Sequences: 28952
Number of extensions: 298677
Number of successful extensions: 1034
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)