Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o13
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    27   1.6  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.1  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    26   4.8  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    26   4.8  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    25   6.3  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    25   8.4  
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    25   8.4  

>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
 Frame = +1

Query: 40  DIIS--IKKQNSI*CVKFLILTVFEFSIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFL 213
           DII+  +  QNS    K   +     S  L  + ++SLP + +   +  S A  +    L
Sbjct: 65  DIIAPQLPSQNSEIIEKNSPVNKLNSSTSLTTHQLASLPKLEVTDHDNVSEAETV---VL 121

Query: 214 SDEENKK--VYGKCNNPNGHGHNYVV--LVTVKGPVDPQTGMVMNITDLKKYIKTAILEP 381
           +++E K+  + G  +     G +  +   + V   V+PQ     NIT +   +K +  E 
Sbjct: 122 NEDEEKETSLVGSVSVTEDLGDSSAIGRTILVNNSVEPQMENTANITIVSPSLKESDFES 181

Query: 382 LDHKNLDND 408
            +    DN+
Sbjct: 182 EEKATNDNN 190


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 391 KNLDNDVPYFKTMASTTENVAIYV-WDQLQRIMEKPQLLHEVKILEN 528
           +NLD + P F+       NV +++ +DQ   IM +P LLH++K  +N
Sbjct: 512 ENLDAEDPLFRA------NVHLHMTYDQAIIIMSRPVLLHKMKNAKN 552


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = +1

Query: 175 TFSSAHRLHSPFLSDEENKKVYGKCNNPNGHG---HNYVVLVTVKGPVDPQTGMVMNITD 345
           +F ++ R+  P +S++  +++YG  N          N +  VT+    D        +T 
Sbjct: 42  SFMTSSRMDKPSMSNKPREQMYGLGNMTAVQEPIPENSLKTVTL----DQAQTAASTVTG 97

Query: 346 LKK-YIKTAILEPLDHKNLDNDVPYF 420
           L   Y+      PLD++ LD+ +P+F
Sbjct: 98  LHPIYMDFQATSPLDYRVLDSMLPFF 123


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 121 LLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVYGKCNNPNGHGHNY 279
           L+NY  +  P  S  RRET    +  HS   S +E    Y    + +    +Y
Sbjct: 129 LMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNFEDASSPQSSY 181


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 316 QTGMVMNITDLKKYIKTAILEPLDHKNLDND 408
           Q G +    DL  +I   +    +HK LDND
Sbjct: 89  QQGQIETKPDLTLFINELLTTKKEHKKLDND 119


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 328 VMNITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIME 489
           V+ I+DL+K+  T  +     +    DVP    +  T EN+ + + D  + + E
Sbjct: 62  VLRISDLRKHGVTVHMNITSFRQPIADVPAIYFVQPTQENIELIIEDLSKGLYE 115


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +1

Query: 343 DLKKYIKTA----ILEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIMEK 492
           D   YI+TA     ++ L  K  DN+V      A  T + +   +D +QRIM K
Sbjct: 90  DNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,553
Number of Sequences: 5004
Number of extensions: 50136
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)