Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o13
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891...    29   2.8  
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609...    29   2.8  
09_04_0476 - 17922072-17922469,17922546-17923241,17923405-179235...    28   4.9  
06_03_0120 + 16859617-16860504,16860970-16861146,16861242-168614...    28   4.9  

>08_02_0269 + 15087481-15087893,15087978-15088074,15089068-15089112,
            15089281-15089492,15090809-15090911,15091002-15091097,
            15091405-15091473,15093341-15093588,15093640-15093759,
            15093847-15094284,15094503-15094620,15095262-15095303,
            15097099-15097161,15097365-15097475,15097730-15097801,
            15097875-15097993,15099682-15099745,15100238-15101860
          Length = 1350

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 136  MSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVYGKCNNPNGHGHNY 279
            M +LP+     +E  + A+R  + F  +EE    YG+  N +G G +Y
Sbjct: 1246 MDTLPVDRYYPQEHHNGAYRPQTNF-GEEEQAAAYGRRRNDHGWGPDY 1292


>03_02_0168 +
           6094658-6096220,6096335-6096608,6096671-6096821,
           6097052-6097262,6097344-6097550,6097982-6098350
          Length = 924

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 393 LMVEWFQDGCFYVFLEVSYIHHHTSLR 313
           L+V W+Q G FY F    + HH T  R
Sbjct: 632 LLVRWYQVGAFYPFFR-GHAHHDTKRR 657


>09_04_0476 -
           17922072-17922469,17922546-17923241,17923405-17923569,
           17923670-17924105,17924314-17924739
          Length = 706

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 85  FLILTVFEFSIELLNYTMSSLPIVS--IIRRETFSSAHRLHSPFLSDEENKKVYGKCNNP 258
           F   T +  SI   N    ++P V   +IRRET   A R  S +    +N   +   N+ 
Sbjct: 207 FRYSTTYIPSINFWNDYNGTVPAVMDWVIRRETCEEAKRDMSSYACVSDNSDCH---NST 263

Query: 259 NGHGH 273
           NGHG+
Sbjct: 264 NGHGY 268


>06_03_0120 +
           16859617-16860504,16860970-16861146,16861242-16861435,
           16861952-16862048
          Length = 451

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 46  ISIKKQNSI*CVKFLILTVFEFSIELLNYTMSSLPIVSIIRRETF-SSAHRL 198
           IS+K Q  +  VK +I+T+ +F I      +  +P  SII   T+  + H L
Sbjct: 382 ISVKCQKEVMWVKKIIMTLTQFGIPHQRICVKEIPRSSIISEMTYLQTEHNL 433


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,352,707
Number of Sequences: 37544
Number of extensions: 273668
Number of successful extensions: 572
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)