Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o13
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)                       147   5e-36
SB_31649| Best HMM Match : No HMM Matches (HMM E-Value=.)             144   4e-35
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_28695| Best HMM Match : Ras (HMM E-Value=0)                         28   5.0  
SB_44573| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               27   8.7  

>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 1026

 Score =  147 bits (357), Expect = 5e-36
 Identities = 73/139 (52%), Positives = 101/139 (72%)
 Frame = +1

Query: 112  SIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVYGKCNNPNGHGHNYVVLV 291
            ++ L   TMS  P V I R ETFS++HRLH+P L++++N++++G+CNN NGHGHNY V V
Sbjct: 877  AVYLAAVTMSR-PFVYITRTETFSASHRLHNPTLTNQKNQELFGRCNNKNGHGHNYKVSV 935

Query: 292  TVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQ 471
            TV   VD  TGMV+N+  LK  I+  +L  LDHKNLD DV YFKT+ ST ENVAIY++DQ
Sbjct: 936  TVASTVDGTTGMVINLVTLKGKIE-EVLGKLDHKNLDMDVAYFKTVVSTAENVAIYIYDQ 994

Query: 472  LQRIMEKPQLLHEVKILEN 528
            L+ ++     L+EV ++E+
Sbjct: 995  LKPLLPDGS-LYEVGLIES 1012


>SB_31649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score =  144 bits (350), Expect = 4e-35
 Identities = 74/143 (51%), Positives = 99/143 (69%)
 Frame = +1

Query: 106 EFSIELLNYTMSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVYGKCNNPNGHGHNYVV 285
           E S+E+ +   S  P V I R ETFS+ HRLHS  L+D++N +++GKCNN NGHGHNY V
Sbjct: 53  ESSVEV-SELHSKRPFVYITRSETFSACHRLHSTKLTDQQNIELFGKCNNKNGHGHNYKV 111

Query: 286 LVTVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVW 465
            VTV   VD  TGMVMN+  LK  I+  +L  LDHKNLD DV YF+T+ ST EN+A+Y++
Sbjct: 112 EVTVASTVDEDTGMVMNLVALKGKIE-EVLSELDHKNLDLDVEYFQTVVSTAENIAVYIY 170

Query: 466 DQLQRIMEKPQLLHEVKILEN*K 534
           +QL R +    +L+EV++ E  K
Sbjct: 171 NQLNRGL-PDGILYEVRVHETDK 192


>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1198

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
 Frame = +1

Query: 226  NKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDLKKYIKTAIL--EPLDHKNL 399
            +KK   +    +  GH+ +  V V+    P+ G+V ++ + KK  K      +PL  K+ 
Sbjct: 986  SKKESKESKRDSKKGHDQIDAVDVQLQDTPKNGLVSDVVETKKNSKKEKFKKKPLKSKSA 1045

Query: 400  DNDVPYFKTMASTTEN-VAIYVWDQLQRIMEKPQLLHEVKILEN*KKS 540
            +N V   +T  +  ++    +VW+Q  +++  P L +  K   N  KS
Sbjct: 1046 ENLVEAQRTDLTIVQSPYTEWVWNQDAKLV--PNLYNAPKHNTNGNKS 1091


>SB_22054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -3

Query: 315 RIYRTLYCYKNNIIMTVTIRIV 250
           RIYR+L+ YKN++ M ++I I+
Sbjct: 58  RIYRSLFTYKNSLTMIISIWII 79


>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 205 PFLSDEENKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDL 348
           P   DEE  K +G+  NP  +G N     + + P D + G++    DL
Sbjct: 471 PQSMDEEGPKHHGQTTNPKHNGGNKETTSSSQTPTDYKPGIIEVAVDL 518


>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1058

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 334  NITDLKKYIKTAILEPLDHKNLDN--DVPYFKTMASTTENV 450
            N TDL +  ++ +++ +D KNL N  D  Y +T A T  N+
Sbjct: 1009 NKTDLAEDEESRVVKTIDGKNLANQYDALYMETSAKTGNNI 1049


>SB_44573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 354 FLEVSYIHHHTSLRIYRTLYCYKNN-IIMTVTIRIV 250
           F+ +    +H + R Y+T YC KNN +   V  R++
Sbjct: 77  FVNLPVSENHDTNRYYKTSYCNKNNELTAEVQARVI 112


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 376  EPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIMEKPQLLHEV 513
            EPL H NL N  PY +   +  E        Q  R + +P+++  V
Sbjct: 1783 EPLQHSNLVNSTPYIRPSQTHNEKSHWGTGPQRARPVVRPRVVGHV 1828


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,445,227
Number of Sequences: 59808
Number of extensions: 356234
Number of successful extensions: 963
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)