Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o13
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14040.1 68417.m02169 selenium-binding protein, putative cont...    27   7.2  
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    27   7.2  
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    27   7.2  
At5g08270.1 68418.m00974 expressed protein                             27   9.5  
At3g45800.1 68416.m04957 hypothetical protein                          27   9.5  
At3g27785.1 68416.m03466 myb family transcription factor (MYB118...    27   9.5  

>At4g14040.1 68417.m02169 selenium-binding protein, putative
           contains Pfam profile PF05694: 56kDa selenium binding
           protein (SBP56); similar to Putative selenium-binding
           protein (Swiss-Prot:O23264) [Arabidopsis thaliana];
           similar to selenium binding protein (GI:15485232)
           [Arabidopsis thaliana]
          Length = 487

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 175 TFSSA-HRLHSPFLSDEENKKVYGKCNNPNGHGHNYVVLVTVKGPVDPQTGMVMNITDLK 351
           TFSS  HRL  P++ DE +   +  C++ +G        + + G +  +   +   TD K
Sbjct: 69  TFSSVIHRLKMPYIGDELHHTGWNSCSSCHGDASADRRYLVLPGLISGRIYAIDTKTDPK 128

Query: 352 KYIKTAILEP 381
                 ++EP
Sbjct: 129 APSLYKVVEP 138


>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 127 NYTMSSLPIVSIIRRETFSSAHRLHSPFLSDEENKKVY 240
           N   SS   VS +  +T SS HR    F+S  +++  Y
Sbjct: 600 NIAQSSFYHVSELYEDTLSSFHRFRPQFISSSDSQPTY 637


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +1

Query: 406 DVPYFKTMASTTENVAIYVWD--QLQRIMEKPQLLHEVKILEN*KKSCCVPWW 558
           D   F T+ ST E+    +W   +L   +  PQL     +  +  K  CV WW
Sbjct: 77  DQRIFSTVFSTGESFGAAIWQIPELYGQLNSPQLERVASLDAHVGKINCVLWW 129


>At5g08270.1 68418.m00974 expressed protein
          Length = 386

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 412 PYFKTMASTTENVAIYVWDQLQRIME 489
           P  +T A+TTEN +  VW  L R +E
Sbjct: 240 PEIRTEATTTENSSDKVWKMLSRPLE 265


>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +1

Query: 337 ITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVWDQLQRIMEKPQ 498
           I  +K  I+T I +   + +L+  V Y +   + + ++ I +W+QLQ+  E P+
Sbjct: 122 IDKVKNLIETCIYK---YMSLEETVTYLEDNHNISHHLTITIWEQLQK--ESPE 170


>At3g27785.1 68416.m03466 myb family transcription factor (MYB118)
           contains PFAM profile: PF00249 myb-like DNA binding
           domain
          Length = 437

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 413 HTSKLWQVLQKMSQYMSGTNFKE*WKNH 496
           H +K W  + KM Q   G   +E W NH
Sbjct: 207 HGTKKWSQIAKMLQGRVGKQCRERWHNH 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,289,996
Number of Sequences: 28952
Number of extensions: 245410
Number of successful extensions: 604
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)