Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o12
         (333 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_24740| Best HMM Match : Fer2 (HMM E-Value=1.3)                      26   6.6  
SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)              26   6.6  
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               26   8.8  
SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35)                    26   8.8  

>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 102 GCWPSISSGSTSQRIHRRRSAFYMYVHT 19
           G W +  + S   R+H+RR+A ++Y  T
Sbjct: 337 GIWHTRRTSSRGIRLHKRRNAMFVYAKT 364


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -3

Query: 268 PSFFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAIT 140
           P   V ++ Q   +P + +AP+TT + + + A      T   T
Sbjct: 396 PEISVTISTQPKKAPGITVAPETTVVPETTVASETTAETHQTT 438


>SB_24740| Best HMM Match : Fer2 (HMM E-Value=1.3)
          Length = 214

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = +3

Query: 12  RVPCGRTYKMQNDAGEFVD--LYCPRKCSAS----NRLIHAKDHASVQLVIADVDPATGR 173
           RV CG+TY  +ND     D   Y     S S    +R IH  +  S Q    ++  A  +
Sbjct: 43  RVECGKTYTFKNDRIRVFDDVKYLSTNTSTSIEPADRQIHDINLTSEQFA-ENIIGANVK 101

Query: 174 AADTSKMYVVCGAIRRMGESDDCIV 248
           AA++    VVC       +S+D ++
Sbjct: 102 AANSC---VVCNTTLNQDDSEDDMI 123


>SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = +3

Query: 12   RVPCGRTYKMQNDAGEFVD--LYCPRKCSAS----NRLIHAKDHASVQLVIADVDPATGR 173
            RV CG+TY  +ND     D   Y     S S    +R IH  +  S Q    ++  A  +
Sbjct: 1575 RVECGKTYTFKNDRIRVFDDVKYLSTNTSTSIEPADRQIHDINLTSEQFA-ENIIGANVK 1633

Query: 174  AADTSKMYVVCGAIRRMGESDDCIV 248
            AA++    VVC       +S+D ++
Sbjct: 1634 AANSC---VVCNTTLNQDDSEDDMI 1655


>SB_43579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 102 RLIHAKDHASVQLVIADVDPATGR 173
           R+ H  +HA  Q++ A +DP TG+
Sbjct: 44  RVHHGINHAKSQILTAKLDPLTGK 67


>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 3094

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 250 LTMQSSDSPILRIAPQTTYILDVSAA 173
           +T +++ +P   +AP+TT +L+ SAA
Sbjct: 7   VTAETTAAPETTVAPETTAVLETSAA 32


>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 275

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 138 LVIADVDPATGRAADTSKMYVVCGAI 215
           L++AD+ P T        +Y++C  I
Sbjct: 249 LIVADILPPTSEVVPVISIYIICSTI 274


>SB_10821| Best HMM Match : TFIIB (HMM E-Value=0.35)
          Length = 473

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 19  RVDVHIKCRTTPVNSLTCTARGNARPATAS-STLRT 123
           +V VHIK RT P  S   T + NAR ++   S L+T
Sbjct: 6   QVTVHIKKRTEPQESDQKTKKNNARGSSRGYSGLKT 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,679,651
Number of Sequences: 59808
Number of extensions: 191268
Number of successful extensions: 625
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)