Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o11
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    29   0.57 
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    27   2.3  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   2.3  
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ...    26   4.0  
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    26   5.3  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    26   5.3  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.0  
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.0  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    25   7.0  
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    25   9.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.3  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = +1

Query: 172 SVVNDRPIIGVLSQEQSFYLHGKFPEENYTSYIASSYVKDIEASGARVVPILIGKDRSYY 351
           SV+N+  +I  L     F+    F EE+          + IEA    V P+ +G D    
Sbjct: 142 SVINELDVIAKLGTP--FWPFTSFNEEDIKDAKDFDVTRPIEAVFTYVDPVRLGLDLQLV 199

Query: 352 KELMKKINGVL 384
            EL +  NGVL
Sbjct: 200 MELGQSKNGVL 210


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 280 YVKDIEASGARVVPILIGKDRSYYKELMKKINGVLIPGGATF 405
           YV+ + A+ +    +L GK R Y KE +  ++ +  P G  F
Sbjct: 156 YVEPVPATLSNKSLLLAGKLRKYLKEFLPYVDAIGTPEGYAF 197


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 526 VILASGRGKKENRITCHSFGKSAT*FYF 609
           VI+  G  +K N ITC  FG S T +YF
Sbjct: 158 VIVVDGTPEK-NVITCMKFGLSTTLYYF 184


>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 163 NEYSVVNDRPIIGVLSQEQSFYLHGKFP---EENYTSYIASSYVKDIEA 300
           N Y+ +N   I+  L++ Q    H       E+NY S +ASS ++ I A
Sbjct: 92  NPYNDINIAEIMSPLTKPQDLLTHPAISSIFEQNYLSILASSALEIISA 140


>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 364 KKINGVLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELL 525
           + I+G++IPGG +         +  + + +    L D G   PI+GTC G  LL
Sbjct: 58  ENIDGLIIPGGES--TTIGKLINIDEKLRDRLEHLVDQG--LPIWGTCAGMILL 107


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 642 TSRNILLERKSEVKSSGRFSKRVTSDS 562
           TS+N+L E  S V+ + RFS+ VT+ S
Sbjct: 325 TSKNLLPETPSIVRFNPRFSQLVTAHS 351


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 163 NEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTS 264
           N Y++ +DR ++ +L   Q F+    FP  N  S
Sbjct: 405 NSYTISSDRSVVAILVNSQIFFY--SFPVSNLFS 436


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 229 LHGKFPEENYTSYIASSYVKDIEASG 306
           L+GK PE N  S++ S Y K +   G
Sbjct: 78  LNGKLPEVNIESHMLSKYRKYLNEGG 103


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 224 NDCS*ESTPIIGLSFTTEYSLLSTITAPSQ*KTYNQSKSNALFIVITVNQSSPENE-SHL 48
           N C  E    +  S + EY+   T  +P      + S+   ++IV T+N S P+++ S L
Sbjct: 26  NRCQ-EDLFALSSSKSPEYAFSLTQQSPFGPLDQSSSRRTFMYIVATLNASYPDHDFSSL 84

Query: 47  IKTNF 33
             T+F
Sbjct: 85  QPTDF 89


>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 148 VIVDSNEYSVVNDRPIIGVLSQEQSFY 228
           +   +N+ ++V  +PIIG+ + E ++Y
Sbjct: 162 ITTTANQDTIVKSKPIIGIDAWEHAYY 188


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 348  IRTIFTDQNRHNPSSRCLN-VFDIRRSNVACVVLFREFSME 229
            I T+F  +   +PSS  L+ V+++ + N+     F E+S++
Sbjct: 1752 IITLFEKEANEHPSSIALHFVYNVDKENIYSYKFFSEYSIK 1792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,014
Number of Sequences: 5004
Number of extensions: 57042
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)