Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o11
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44698| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   5e-11
SB_8739| Best HMM Match : Peptidase_C26 (HMM E-Value=0.037)            60   1e-09
SB_46752| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_3484| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.4)              50   2e-06
SB_13255| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)                   30   1.4  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)                   29   3.2  
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)               28   5.6  
SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026)                 28   5.6  
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)                28   5.6  

>SB_44698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 30/60 (50%), Positives = 39/60 (65%)
 Frame = +1

Query: 370 INGVLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELLVILASGRG 549
           I  +++PGG      SN Y   G+ +YELA+E N+ G  FPI+  CLGFELL + ASGRG
Sbjct: 78  IQRLVLPGGHVRLQDSN-YGKIGKRLYELAVEANNKGSVFPIWAECLGFELLALCASGRG 136


>SB_8739| Best HMM Match : Peptidase_C26 (HMM E-Value=0.037)
          Length = 149

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 31/58 (53%), Positives = 42/58 (72%)
 Frame = +1

Query: 379 VLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELLVILASGRGK 552
           VL PGG +   +S GYA  G  I++LA+E ND GD FP++GTCLGF+LL + A+ +GK
Sbjct: 2   VLFPGGDSDLWKS-GYARTGAAIFDLAMEANDNGDVFPLWGTCLGFQLLHVRAA-KGK 57


>SB_46752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 26/64 (40%), Positives = 40/64 (62%)
 Frame = +1

Query: 352 KELMKKINGVLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELLVI 531
           +++   ++GV+ PGG    N S  YA  G+ I ELAI+ N  G+ FP++  CLG EL+ +
Sbjct: 478 EKMFHSVSGVVFPGGHIKLNASR-YAAVGKQILELAIKENLKGEVFPVWAECLGLELISM 536

Query: 532 LASG 543
           + SG
Sbjct: 537 IISG 540


>SB_3484| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.4)
          Length = 103

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/56 (46%), Positives = 39/56 (69%)
 Frame = +1

Query: 160 SNEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTSYIASSYVKDIEASGARVVPIL 327
           ++E S+  ++PIIG+L+QE +    GK  +E    YI  SYV+ +E++GARVVPIL
Sbjct: 42  ADESSIRTNQPIIGILAQEAT----GKISKEVSGQYIEGSYVQMVESAGARVVPIL 93


>SB_13255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/73 (32%), Positives = 41/73 (56%)
 Frame = +1

Query: 106 LLLLWLYVFHCEGAVIVDSNEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTSYIASSYV 285
           ++L   +V   +   I       +  +RPIIG+L+ +    +  K+ +    S+I +SYV
Sbjct: 167 VILSLFFVGSAKARSIQHPTRDGLYTNRPIIGILAHDIDDDIIKKYGK----SFIPASYV 222

Query: 286 KDIEASGARVVPI 324
           K +E++GARVVPI
Sbjct: 223 KYLESAGARVVPI 235


>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
          Length = 304

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
 Frame = +1

Query: 202 VLSQEQSFYLHGKFPEENYTSYIASSYVKDIEASGARVVPILIGKDRSYYKELMKKINGV 381
           +L Q Q+   H  +  E  +  +    + D+ A      P +   D  Y +  M K + +
Sbjct: 45  LLGQNQT---HLVYESEESSKELGGFSIVDVNAVDLEKFPSI--SDVKYSRITMNKGDCI 99

Query: 382 LIPGGATFFNQSNGYADAGQHI-YELAIELNDVG 480
            +PGG     +SNGY +    I +    E +D+G
Sbjct: 100 FVPGGIWHHVRSNGYMNTAVSIWFSRLYEFSDMG 133


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 148  VIVDSNEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTSYIASSYVKDIEASGARVVPIL 327
            VI  S  + V  ++  IGV+S     ++H  F + +  SY+  + + DI  SG     + 
Sbjct: 3975 VIGVSKSFDVSPNKTRIGVVSYSSDAHIHFNFKKHSNVSYVEEA-INDISFSGGAKRNLA 4033

Query: 328  IGKDRSY 348
             G D ++
Sbjct: 4034 RGLDATF 4040


>SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)
          Length = 316

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 378 SIDSRGSNVLQPIQWIR*RRSTHLRACYRIERRRRLFSDLRNLSWF 515
           S  ++GS+VL P+   + R STH+      +  RR +  +RNL+ F
Sbjct: 112 SNQAQGSDVLLPLHISKERFSTHINLLLYSQGERRHYCLIRNLNRF 157


>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
          Length = 910

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 378 SIDSRGSNVLQPIQWIR*RRSTHLRACYRIERRRRLFSDLRNLSWF 515
           S  ++GS+VL P+   + R STH+         RR +  +RNL+ F
Sbjct: 180 SNQAQGSDVLLPLHISKKRFSTHINLLLYSHGERRHYCLIRNLNRF 225


>SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026)
          Length = 557

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 103 ALLLLWLYVFHCEGAVIVDSNEYSVVNDR 189
           A++L+W+YV       +V  N+Y  V+DR
Sbjct: 176 AIILIWIYVTFLAAMPLVGWNQYVYVDDR 204


>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
          Length = 825

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 199 GVLSQEQSFYLHGKFPEENYTSYIASSYVK 288
           G    E+S  +HGK PE+ Y+SY   S  K
Sbjct: 783 GFTDLEKSRRIHGKSPEQFYSSYCTDSKQK 812


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,354,039
Number of Sequences: 59808
Number of extensions: 413453
Number of successful extensions: 1040
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)