Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o09
         (325 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   4.6  
SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_7993| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.1  
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.1  

>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 106 TNSSSYNEKTRKNFVPHYSKFSYPKLHKCF 17
           T    +N++ R+    ++ +FS   +HKCF
Sbjct: 866 TRVGCFNDRGRRALPHYFGRFSKGAIHKCF 895


>SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/66 (22%), Positives = 30/66 (45%)
 Frame = -1

Query: 232 IRITSKPHIPLVQRTTPSISKRASIMIA*SQIMYMIKTPAR*TNSSSYNEKTRKNFVPHY 53
           +R+T  P + L +   P ++K   + +  + I  + K P      + +   T KN +P  
Sbjct: 21  LRVTKNPILRLTKNPIPRVTKDPILRVTKNPIPRVTKNPFPRVTKNPFPRVT-KNPIPRV 79

Query: 52  SKFSYP 35
           +K  +P
Sbjct: 80  TKEPHP 85


>SB_7993| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 676

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 255 IASKPFTS*GLPVSLISLWY 196
           +ASKPF++ G+P  LIS  Y
Sbjct: 656 MASKPFSTEGIPNQLISFQY 675


>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 212  SYPSGTTHDSIYQ*ASVYNDCLKSDYVYDKDPSPVDQQQQL 90
            S+ +   H +++Q +S YN      +VY   PSP     QL
Sbjct: 1610 SFNTRPLHGNLFQFSSAYNGLPPPYHVYQPPPSPTICVSQL 1650


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,529,539
Number of Sequences: 59808
Number of extensions: 173450
Number of successful extensions: 293
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)