Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o09
         (325 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35995.1 68418.m04334 F-box family protein contains F-box dom...    29   0.94 
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea...    27   2.2  
At1g01760.1 68414.m00095 adenosine-deaminase family / editase fa...    27   2.2  
At3g47700.1 68416.m05196 chromosome structural maintenance prote...    26   5.0  
At3g16880.1 68416.m02158 F-box protein-related contains weak hit...    26   5.0  
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    25   8.8  

>At5g35995.1 68418.m04334 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 455

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 131 IHNLTLGNHYRRSLTDRWSRALYQR 205
           I  LTL +HY +S  +RW R+  +R
Sbjct: 78  IKRLTLNSHYEKSSVNRWIRSALKR 102


>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
           family protein similar to WD-repeat protein mip1
           (SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
           PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
          Length = 1344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 239 SLHKD--YQ*ASYPSGTTHDSIYQ*ASVYNDCLKSDYVYDKDPSP 111
           SLH D      S  +G  H       +VY+ C+++ +   KDPSP
Sbjct: 805 SLHSDSGMMHDSVSNGAVHQPRLLDNAVYSQCVRAMFALAKDPSP 849


>At1g01760.1 68414.m00095 adenosine-deaminase family / editase
           family similar to double-stranded RNA-specific editase
           GB:AAF69673 GI:7770275 from [Danio rerio]
          Length = 325

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 62  YEILPSFFIITAAVGLPGWGLYHIHNLTLGNHYRRSLTDR 181
           Y++L   +I T  VG     L+   N +L +H RRSL +R
Sbjct: 207 YQVLQPVYISTITVGQ---SLHSPDNFSLADHLRRSLYER 243


>At3g47700.1 68416.m05196 chromosome structural maintenance
           protein-related contains weak similarity to
           RAD50-interacting protein 1 [Homo sapiens]
           gi|11967435|gb|AAG42101
          Length = 795

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 122 LYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTG--NPYEVNGLE 250
           L  + N     HY  S+ + WS  ++  +M  TG  +P EV GLE
Sbjct: 558 LIKVSNSINAGHYIESVLEEWSEDVFFLEMG-TGQHDPQEVPGLE 601


>At3g16880.1 68416.m02158 F-box protein-related contains weak hit to
           Pfam PF00646: F-box domain; contains weak hit to TIGRFAM
           TIGR01640: F-box protein interaction domain
          Length = 365

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 125 YHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGNPY 232
           Y I+ L   +     +   W+ A Y+ D+ + GN Y
Sbjct: 172 YEIYELDSNSWRALDVNSNWATAFYKMDVSVKGNSY 207


>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
           myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
           thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 82  KTRKNFVPHYSKFSYPKLH 26
           K +KN   HYS+ SY KLH
Sbjct: 797 KIQKNGRRHYSRKSYKKLH 815


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,609,818
Number of Sequences: 28952
Number of extensions: 117416
Number of successful extensions: 305
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)