Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10o08
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 28 0.82
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 1.4
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr... 26 3.3
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 4.4
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 26 4.4
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 26 4.4
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 26 4.4
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 25 5.8
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 25 5.8
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 5.8
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.6
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 28.3 bits (60), Expect = 0.82
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 244 ILRQESIFICIFSDLWDKYDISRIPFILIKLFSS 143
+LR+ S F + S L KY R+P I +K F S
Sbjct: 317 VLRRYSDFFWLHSYLMKKYPFRRVPLIPLKKFHS 350
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.5 bits (58), Expect = 1.4
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 182 YVVLIPEIGEDADK--NTLLSENGLPEFNEMSIEKCIATISKQSLEYENGVRQIEYSAPN 355
Y + I E+G++ T L +N L EFN++ K +SK S EY+N ++
Sbjct: 2014 YDLKIHELGKERYDIIATPLFQN-LTEFNDLIKSKVAIRVSKTSTEYDNITTYLQ----- 2067
Query: 356 CKNAFVEIFQPLEKLDTLLELT 421
+ +F+ L+ L ++ +L+
Sbjct: 2068 AARKVLHVFKGLQDLASIFDLS 2089
>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.3
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 175 IPFILIKLFSSVSAYYMC 122
IPFILI L ++ +Y+C
Sbjct: 133 IPFILIPLIPNIPGFYLC 150
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +2
Query: 329 RQIEYSAPNCKNAFVEIFQPLEKLDTLLELTWGMAKTLYLGNSSLMPTKSYIQIHERAHN 508
R++ Y + +C F+P+ KLDT L + + + + S++ T+S ++ R ++
Sbjct: 559 REVAYGSIDCLPMDKGDFEPIMKLDTTPLLEYDVGSGVPMTAGSVLETESEEDLYFRDYS 618
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 255 SGKPFSDRRVFLSASSPISGISTTYPE 175
S PFS F +ASSP S +ST E
Sbjct: 136 SVSPFSQFASFSNASSPFSNVSTASSE 162
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 4.4
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +2
Query: 284 IATISKQSLEYENGVRQIEY-SAP-NCKNAFVEIFQPLEKLDTLLELTWGMAKTLYLGNS 457
IA +++ + Y R++E+ S P NC ++F PL + + E+ W + N
Sbjct: 318 IAIVTRNFMAYIETKRKLEFDSIPFNCP-LITQLF-PL--ISSPKEMAWLLLIVCTDSNE 373
Query: 458 SLMPTKSYIQIHERAHNARSTK 523
S P +YI R RS K
Sbjct: 374 SWFPVHAYINTKTRILRPRSPK 395
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 166 ILIKLFSSVSAYYMCTKKRQGHIFSVI 86
IL F + YY+C K Q HI+++I
Sbjct: 144 ILRPEFDKLFTYYLCKFKDQEHIYTLI 170
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 450 PRYRVFAIPQVNSKRVSSFSKGWKISTN 367
P+Y++ A P SKRV ++G K++TN
Sbjct: 126 PQYKIPAAPAPTSKRV--VNRGLKLNTN 151
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -1
Query: 396 FSKGWKISTNAFLQFGAEYSICRTPFSY 313
F+ GW N F+ F E + C F Y
Sbjct: 163 FAVGWNYFMNYFVTFPLELTTCAITFRY 190
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 104 ALSFFRTHIISRHARKQFYQNKRNSGYVVL 193
++SF TH ++ +Y N+ N Y++L
Sbjct: 851 SISFCFTHAVTEKVLYYYYGNECNESYIIL 880
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 246 PFSDRRVFLSASSPISGISTT 184
P +D+ + L SP+S STT
Sbjct: 169 PINDKNILLPEQSPLSNFSTT 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,414
Number of Sequences: 5004
Number of extensions: 48410
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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