Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10o08
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 36 0.029
11_03_0164 + 10972526-10972723,10972818-10973549,10974148-109742... 29 1.9
12_02_0917 + 24281029-24281137,24281998-24282095,24282196-242823... 29 2.5
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 29 2.5
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 28 4.4
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 28 4.4
06_02_0356 - 15118498-15119217,15120020-15120238,15120320-15120634 27 7.7
03_06_0502 - 34384285-34384503,34384595-34384755,34384854-343849... 27 7.7
02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541... 27 7.7
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 35.5 bits (78), Expect = 0.029
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +2
Query: 254 EFNEMSIEKCIATISKQSLEYENGVRQIEYSAPNCKNAFVE--IFQPLEKLDTLLELTWG 427
+ +++ +EK I + +QSL+ ++ +++++ S +C+ A + I LEK L EL
Sbjct: 750 KLSKLEMEKKI--LDEQSLDQKDELQRLKSSLESCEKAMEDCNIQNELEKDSILSELLTL 807
Query: 428 MAKTLYLGNSSLMPTKSYIQ 487
+ +YL +SSLM K I+
Sbjct: 808 QKEVVYLSSSSLMKEKESIR 827
>11_03_0164 +
10972526-10972723,10972818-10973549,10974148-10974285,
10974522-10974991,10975069-10975239,10975320-10975602,
10975682-10975795
Length = 701
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 229 SIFICI-FSDLWDKYDISRIPFILIKLFSSVS 137
S FI + F DLWD Y + I L+K +SS++
Sbjct: 484 STFIAVDFKDLWDLYRVRAIDTNLLKCYSSLT 515
>12_02_0917 +
24281029-24281137,24281998-24282095,24282196-24282372,
24282490-24282590,24282684-24282759,24282843-24282902,
24282999-24283195,24283296-24283392,24283478-24283564,
24283925-24283983,24284535-24284626,24284706-24284783,
24284891-24285051,24285303-24285530
Length = 539
Score = 29.1 bits (62), Expect = 2.5
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = -1
Query: 438 VFAIPQVNSKRVSSFSKGWKISTNAFLQFGAEYSICRTPFSYSRLCLLIVAIHFSIDIS- 262
+ + +V S+RV S G+ I + F +FGA ++ P + C+L I ++ +S
Sbjct: 359 LLGLTKVGSRRVIQISTGFMIFFSIFGKFGAFFASIPLPIFAAIFCILF-GIVAAVGVSY 417
Query: 261 LNSGKPFSDRRVFLSASSPISGIS 190
+ S R +++ S GIS
Sbjct: 418 MQFVNKNSMRNIYIIGLSLFLGIS 441
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 206 GEDADKNTLLSENGLPEFNEMSIEKC-IATISK 301
GE+ DK+ + S+ G PE +E ++ C + T++K
Sbjct: 67 GEEGDKDYIPSKEGFPEGSEATVRNCALQTMAK 99
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +2
Query: 269 SIEKCIATISKQSLEYENGVRQI-EYS-APNCKNAFVEIFQPLEKLDTLLELTWGMAKTL 442
++ + + ++++ L + +R + ++S P C+ AF E+ Q L+ L+ T G L
Sbjct: 610 ALSRFLPKVAERGLPFFKTLRGMGKFSWTPECQAAFDELKQYLQSPPALISPTLGSELLL 669
Query: 443 YLGNSSLMPTKSYIQ 487
YL S + + + +Q
Sbjct: 670 YLAASPVAVSAALVQ 684
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 218 DKNTLLSENGLPEFNEMSIEKCIATISKQSLEYENGVRQIEYSAP 352
D T++++N LP F ++E ++ + E ENG RQI++ P
Sbjct: 157 DDLTIIAKNNLP-FMVKNVEAGQSSNILRQKELENGARQIKWELP 200
>06_02_0356 - 15118498-15119217,15120020-15120238,15120320-15120634
Length = 417
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 229 SIFICI-FSDLWDKYDISRIPFILIKLFS 146
S FI + F DLWD Y + I L+K +S
Sbjct: 388 SAFIAVDFKDLWDHYRVRAIDTNLLKCYS 416
>03_06_0502 -
34384285-34384503,34384595-34384755,34384854-34384931,
34385444-34385595,34385645-34385703,34385808-34385894,
34385990-34386086,34386232-34386416,34386494-34386553,
34386640-34386715,34386824-34386924,34387039-34387215,
34387302-34387399,34387505-34387604
Length = 549
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Frame = -1
Query: 471 VGMRELLPRYR-----VFAIPQVNSKRVSSFSKGWKISTNAFLQFGAEYSICRTPFSYSR 307
VG+R +P + + + +V S+RV S G+ I + +FGA ++ P +
Sbjct: 356 VGLRYFVPFWNSENAGLLGLTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPGPIIAAI 415
Query: 306 LCLLIVAI 283
CLL +
Sbjct: 416 YCLLFAYV 423
>02_01_0724 -
5415218-5415280,5415398-5415523,5415614-5415710,
5415797-5415861,5415964-5416026,5416127-5416197,
5416430-5416489,5416564-5416663,5416863-5416938,
5417284-5417358,5417451-5417575,5417664-5417722,
5418031-5418109,5418303-5418533
Length = 429
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 392 EKLDTLLELTWGMAKTLYLGNSS 460
E L LLELTW K + +GNS+
Sbjct: 370 ESLGCLLELTWNGQKEISVGNST 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,792
Number of Sequences: 37544
Number of extensions: 262705
Number of successful extensions: 670
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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