Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o08
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)                   29   3.4  
SB_13170| Best HMM Match : YTV (HMM E-Value=2.8)                       28   4.5  

>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
          Length = 1197

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 194 IPEIGEDADKNTLLSENGLPEFNEMSIEKCIATISKQSLEYENGVRQIEYSAPNCKNAFV 373
           +P+  E  D    + + GL  F E   EK      K  LEY NG + ++    + +   V
Sbjct: 613 LPDTAEQKDTKEQVLKQGLTAFGEKVTEKH----EKPKLEYSNGNKAVKIETDSKEKQDV 668

Query: 374 EI 379
           EI
Sbjct: 669 EI 670


>SB_13170| Best HMM Match : YTV (HMM E-Value=2.8)
          Length = 281

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = +2

Query: 155 FYQNKRNSGYVVLIPEIGEDADKNTLLSENGLPEFNEMSIEKCIATISKQSLEYENGVRQ 334
           +Y+N  NS   V   E G    +N   SE G+P +  M+  +      +     E GV  
Sbjct: 155 YYENMANSETGVPYYETGVPYYENMANSETGVPYYENMANSETGVPYYENMANSETGVPY 214

Query: 335 IEYSAPNCKN 364
            E   P  +N
Sbjct: 215 YETGVPYYEN 224



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = +2

Query: 155 FYQNKRNSGYVVLIPEIGEDADKNTLLSENGLPEFNEMSIEKCIATISKQSLEYENGVRQ 334
           +Y+N  NS   V   + G    +N   SE G+P +  M+  +      +     E GV  
Sbjct: 109 YYENMANSDTGVPYYDTGVPYYENMANSETGVPYYENMANSETGVPYYENMANSETGVPY 168

Query: 335 IEYSAPNCKN 364
            E   P  +N
Sbjct: 169 YETGVPYYEN 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,495,081
Number of Sequences: 59808
Number of extensions: 330528
Number of successful extensions: 810
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)