Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o08
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79603-7|CAB01896.1|  259|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z67755-4|CAA91757.1|  336|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC006627-8|AAK85458.1|  276|Caenorhabditis elegans Hypothetical ...    29   2.3  
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    28   4.0  
AF226866-1|AAF33845.1|  279|Caenorhabditis elegans cell-corpse e...    27   7.0  
AC024776-8|AAK68463.1|  279|Caenorhabditis elegans Cell death ab...    27   7.0  
U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fb...    27   9.2  

>Z79603-7|CAB01896.1|  259|Caenorhabditis elegans Hypothetical
           protein M163.7 protein.
          Length = 259

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 360 LQFGAEYSICRTPFSYSRLCLLIVAIHFSIDISLNSGKPFSDRRVFLSASS 208
           LQF A+Y    +PF  +     + +I F +DI  N     S +R  L A S
Sbjct: 7   LQFSADYDFLNSPFVSTSTISSLNSIQFEVDIEHNVNPSMSRKREELYARS 57


>Z67755-4|CAA91757.1|  336|Caenorhabditis elegans Hypothetical
           protein F54F7.4 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 435 RLCTWVIALSCQPNLTYRYMNEHTTQDQLSLRAYQS 542
           ++  W++ + C  NL Y   NE+ T+  LSL+ Y S
Sbjct: 62  KMQVWILLVCCF-NLIYALHNENVTESMLSLQNYTS 96


>AF100672-1|AAC68997.2|  334|Caenorhabditis elegans Hypothetical
           protein W05E7.2 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 342 YSICRTPFSYSRLCLLIVAIHFSIDISLNSGKPFSDRRVFL 220
           Y + +T +      LL+V   FS+DI  N    FS + +FL
Sbjct: 67  YKMVKTSYIIFTCGLLLVLFGFSLDIDFNDASIFSLKSIFL 107


>AC006627-8|AAK85458.1|  276|Caenorhabditis elegans Hypothetical
           protein E01A2.1 protein.
          Length = 276

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
 Frame = +2

Query: 251 PEFNEMSIEKCIATISK-QSLEYENGVRQIEYSAP------NCKNAFVEIFQPLEKL--D 403
           P  N + ++ C     + Q+L  +N V+ + ++ P      N    F EI    +K    
Sbjct: 182 PSINHVRLDGCCQVPPELQALANDNDVQLLVHNDPTPFPTNNIFKTFCEIDSGSQKAVCS 241

Query: 404 TLLELTWGMAKTLYLGNSSLMPTKSYIQIHERAHN 508
            L E TW    ++++   S+M +K YI    R H+
Sbjct: 242 PLFETTWLSRYSVWVRKRSIMTSKGYIVQFFRKHD 276


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
           3, isoform b protein.
          Length = 1178

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 240 RMVYQSSMKCQ*KNVLQQLANKV*NMKMESDKLNIQH 350
           R  Y  ++K Q KNVL  L  K  N+   + +++IQH
Sbjct: 442 RKTYDDNVKVQQKNVLASLKRKKMNVIPSAAEISIQH 478


>AF226866-1|AAF33845.1|  279|Caenorhabditis elegans cell-corpse
           engulfment proteinCED-2 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 380 FQPLEKLDTLLELT--WGMAKTLYLGNSSLMPTKSYIQIHERAHNARSTKFTS 532
           F+  E+L+ L +    W  A+   LG + L+P  +Y+QI    HN R++K  S
Sbjct: 137 FEQGERLEILSKTNQDWWEARNA-LGTTGLVPA-NYVQIQMEFHNDRTSKGAS 187


>AC024776-8|AAK68463.1|  279|Caenorhabditis elegans Cell death
           abnormality protein 2 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 380 FQPLEKLDTLLELT--WGMAKTLYLGNSSLMPTKSYIQIHERAHNARSTKFTS 532
           F+  E+L+ L +    W  A+   LG + L+P  +Y+QI    HN R++K  S
Sbjct: 137 FEQGERLEILSKTNQDWWEARNA-LGTTGLVPA-NYVQIQMEFHNDRTSKGAS 187


>U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 8 protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 192 LSQRSEKMQIKILSCLRMVYQSSMKCQ*KN-VLQQLANKV 308
           L + +E +QIKILS +R V    MK Q  N V+Q+   KV
Sbjct: 289 LEKINEPLQIKILSQIRHVIHRCMKDQNGNHVVQKAIEKV 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,692,946
Number of Sequences: 27780
Number of extensions: 265334
Number of successful extensions: 664
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)