Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10o07
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    77   3e-15
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    62   8e-11
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    54   2e-08
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    52   5e-08
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    38   9e-04
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    32   0.077
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    29   0.41 
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    25   6.7  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   8.8  

>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 34/96 (35%), Positives = 58/96 (60%)
 Frame = +3

Query: 243 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 422
           ++ G+++ S      E+ NPAT E+IG+V + + +E   A+ AA  A+KT+   T + R 
Sbjct: 21  FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQRS 80

Query: 423 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 530
           QL+ ++A L+ EN+  L   +T E GK ++ AE +V
Sbjct: 81  QLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEV 116


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 61.7 bits (143), Expect = 8e-11
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
 Frame = +3

Query: 240 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 419
           LYI+G++  S  T W E  +P+  EVI +V  A + E+  A+ +AK A+KTW K     +
Sbjct: 23  LYINGEWHKSAET-W-ETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEK 80

Query: 420 QQLMFKFARLLRENQSKLAAKITEEQGK-TIADAEGDVLRGIQSVEHC 560
            +L+ K A L  ++   LAA    + GK  +++A GDV   I  + +C
Sbjct: 81  GELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYC 128


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
 Frame = +3

Query: 240 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT---WSKSTV 410
           L+I+ Q+VDS     +++ +P+T ++I  V +A ++++  A+  A+ A++T   W K + 
Sbjct: 25  LFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSS 84

Query: 411 LTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 530
             R + + + A  + +N   LA+  T + GK+I  A GDV
Sbjct: 85  AQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDV 124


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
 Frame = +3

Query: 225 APTTKLYIDGQYVD--SKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT-- 392
           AP   L+IDG++V         I L NPAT E+IG    A+  ++ SA++ A   +++  
Sbjct: 18  APENSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI 77

Query: 393 WSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDV 530
           W+K     R  ++ K A+++RE +  LA   T   GK    A  D+
Sbjct: 78  WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDI 123


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +3

Query: 300 PATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAA 479
           P    ++G V    + ++  ++  A+ A K W  ++   R+  +      +  NQ K A 
Sbjct: 10  PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69

Query: 480 KITEEQGKTIADAE-GDVLRGIQSV 551
              ++ GKT+ DA  G++L  ++ +
Sbjct: 70  IACKDTGKTLVDAAFGEILVTLEKI 94


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 31.9 bits (69), Expect = 0.077
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 294 TNPATNEVIG---RVPEATQDELTSALDAAKRAYKTWSKSTVLTR 419
           T+  TNE++    ++ E  +D L  +L A+K  YK WS+   L R
Sbjct: 5   TDMETNEILDQLDKIDERNEDILLKSLKASKCTYKPWSREEFLRR 49


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 258 YVDSKTTNWIELTNPATNEVIGRV-PEATQDELTSALDAAKRAY 386
           Y  ++T  W+EL NPA  EV G +  E +  E T+++  A RA+
Sbjct: 498 YEPARTGEWMELLNPA--EVFGNIMVEYSYPECTTSVILALRAF 539


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 270 KTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT 392
           KT NW ++TNP        V +  + EL       ++ Y+T
Sbjct: 252 KTLNWYQVTNPTETLSEYSVEDIPESELNEMKLRHRKRYET 292


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 180  KSESQLVLRRSYSSSAPTTKLYIDGQYVDSKTTNWI 287
            KS    +LR++Y    P+  +YIDG  + +  TNW+
Sbjct: 1141 KSTLVELLRKTY----PSEDIYIDGYPLTNIDTNWL 1172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,114
Number of Sequences: 5004
Number of extensions: 46012
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)